Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2497 |
Symbol | |
ID | 6872930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 2376896 |
End bp | 2377576 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 642785577 |
Product | gram-negative pilus assembly chaperone |
Protein accession | YP_002216235 |
Protein GI | 198241837 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.171518 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAATGGA TGATTGCATT ATGCCTGGCT TGTGCCGCTA TGCCTGCGTG GAGCGGCATT TATATATATG GTACACGTAT TATTTATCCG GCGCAGAAAA AAGATATTAC CGTACAATTA ATGAATGACG GTAAACGAAG TTCACTCATC CAGGCGTGGA TTGATAACGG TGATACCAGC CTGCCGCCAG AAAAATTACA GGTTCCATTT ATTATGACCC CCCCTGTAAT TAGAGTTGCG GCAAATTCAG GTCAGCAATT AAAAATAAAG AAGCTCGCTA ATAATTTGCC TGGCGATCGT GAAAGTCTTT TCTACCTCAA TGTATTGGAT ATTCCACCAA ATTCAGACGA GAACAAAGAT AAAAATATCA TTAAATTTGC GCTACAAAAC CGGATAAAGT TGATCTATCG CCCACCGGGG GTACAGAAAG TCGATAAAGC AACATTTTCC CGCTTGCAGT TGCTTCGTGC GCCAGGGAGT ATTAGCGTGA AAAATAATTC CGCAAACTGG ATCACTATTC CAGAAATTAA AGCAAAAAGT AAAGTAAATA AAGAAACCTT ATTACTGGCT CCATGGTCAT CGCAGAGTAT CACCACAACG GTAGTCGTAA ATAGCTATAC CGTGACGCTA ATTGATGATT CTGGTAATTA TTTAAACGAG ACTGTCAAAA TAGAAAATTA A
|
Protein sequence | MKWMIALCLA CAAMPAWSGI YIYGTRIIYP AQKKDITVQL MNDGKRSSLI QAWIDNGDTS LPPEKLQVPF IMTPPVIRVA ANSGQQLKIK KLANNLPGDR ESLFYLNVLD IPPNSDENKD KNIIKFALQN RIKLIYRPPG VQKVDKATFS RLQLLRAPGS ISVKNNSANW ITIPEIKAKS KVNKETLLLA PWSSQSITTT VVVNSYTVTL IDDSGNYLNE TVKIEN
|
| |