Gene SeD_A2305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2305 
Symbol 
ID6875856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp2188380 
End bp2189654 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content49% 
IMG OID642785402 
Productintegrase 
Protein accessionYP_002216062 
Protein GI198242409 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.000673705 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value1.06104e-16 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCACTTA CTGATACCAA AGTAAAAAAT ACCAGACCAT CGGAAAAGGC CGTCAAGCTC 
ACTGACGGGT TTGGCCTCTA TCTGCTGGTG CATCCTAACG GTTCAAAATA CTGGCAGTTA 
GGCTATCGCT TTGATGGCAA ACAGAAGGTG TTTTCCATTG GGGTTTACCC TGCGGTTTCA 
CTTGCCGATG CCAGACAACG CCGGGACGAG GCCAAAAGGC TGCTGGCTCA GGGGATTGAC 
CCGAACGCTA AAAAACAGGC TGATGAAAAA GTCCTTCAGG AGAAGCGGGA TAAAACCCGC 
TCGTTCCGTG TCGTCGCCAA AAGCTGGTTT GCCACCAAAA CAAAATGGTC AGAAGATTAC 
GCCGATACTG TCTGGAAGCG CCTTGAAACC TATGTCTTCC CGGATATAGG CGACAGAAAC 
GTTTCAGAAC TGGATACGGG TGATCTGCTT GTCCCGGTCA AAAAAGCGGA AACACTCGGC 
TACCTTGAAA TTGCCATGCG GATTAAGCAA TACATCACCG CGATCCTACG TCATGCCGTC 
CAGCAAAAGC TTATGCGTCA TAATCCGGCC TATGATATGG AAGGCGCTGT CCAGAAACCA 
GAGACGGAAC ACCGCCCTGC ACTGGAGCTG GAAGAGATCC CGCTACTGCT TGAACGTATT 
GATGCCTACA AAGGTCGTGG ACTGACTACG CTAGCGATTA AACTCAATCT GCTGATCTTC 
ATTCGTTCCA GCGAACTTCG TTTCGCCCGG TGGTCGGAAA TCGACTTCAA AAGTAAGTTA 
TGGGTGATCC CCGAACAGCG GGAAGCGATT GAAAACGTCA AGCACTCGAC TCGTGGGGCT 
AAAATGAAAC GTCAGCACTT CGTTCCCCTT TGCAGGCAGG CTCTCAAGAT ACTGAAAGAG 
ATCCGCCAGC TTACCTATGA AGAAGGTAAC GAAGCAGAAT TAATTTTCAC TGGCTGTTAT 
GATTCATTCA AACCCATGAG TGAAAACACT ATTAACAAGG CGCTACGTAA GATGGGCTAT 
GACACCACAC AGGACATCTG CGGTCATGGT TTCCGCACAC TGGCGTGTAG TGCCTTAATT 
GAGTCTGGTC TATGGTCAGA AGATGCTGTA GAGCTTCAAA TGAGCCATAA GGAAAGTAAC 
AGCGTTCGCG CAGCCTATCC CCATAAGGCC AAGCATCTTG ACCAACGCCG CCTGATGCTC 
CAGTGGTGGG CTGATTTTCT TGATGAGAAT CGGTATGAGA TGGTCAGGCC GTTTGAGTTT 
GCTCAGAAAC AATAA
 
Protein sequence
MSLTDTKVKN TRPSEKAVKL TDGFGLYLLV HPNGSKYWQL GYRFDGKQKV FSIGVYPAVS 
LADARQRRDE AKRLLAQGID PNAKKQADEK VLQEKRDKTR SFRVVAKSWF ATKTKWSEDY 
ADTVWKRLET YVFPDIGDRN VSELDTGDLL VPVKKAETLG YLEIAMRIKQ YITAILRHAV 
QQKLMRHNPA YDMEGAVQKP ETEHRPALEL EEIPLLLERI DAYKGRGLTT LAIKLNLLIF 
IRSSELRFAR WSEIDFKSKL WVIPEQREAI ENVKHSTRGA KMKRQHFVPL CRQALKILKE 
IRQLTYEEGN EAELIFTGCY DSFKPMSENT INKALRKMGY DTTQDICGHG FRTLACSALI 
ESGLWSEDAV ELQMSHKESN SVRAAYPHKA KHLDQRRLML QWWADFLDEN RYEMVRPFEF 
AQKQ