| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2146 |
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| Symbol | potD |
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| ID | 6873234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 2058277 |
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| End bp | 2059323 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642785252 |
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| Product | spermidine/putrescine ABC transporter periplasmic substrate-binding protein |
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| Protein accession | YP_002215915 |
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| Protein GI | 198244206 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.00543395 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAT GGTCACGCCA CCTGCTCGCG GCGGGCGCCC TGGCGCTGGG TATGAGTGCC
GCTCATGCCT CCGACAACGA CACGCTCTAT TTCTATAACT GGACTGAGTA TGTACCGCCG
GGCCTGCTGG AACAGTTCAC TAAAGAGACA GGCATTAAGG TGATTTATTC GACCTACGAG
TCGAACGAAA CCATGTATGC CAAACTCAAA ACCTATAAAG ATGGCGCGTA TGACCTGGTT
GTTCCTTCTA CATACTATGT CGACAAAATG CGCAAAGAAG GCATGATCCA GAAGATCGAT
AAGTCGAAAT TAACCAATTT CCACAACCTC GATCCGGAAA TGCTCAACAA ACCGTTTGAC
CCCAACAACG ATTATTCTGT TCCGTATATC TGGGGCGCAA CGGCGATTGG CGTGAACAGC
GATGCTATCG ATCCAAAAAC CATTACCAGC TGGGCTGACT TGTGGAAACC GGAATATAAA
AACAGCCTGC TTTTAACCGA CGATGCGCGA GAAGTCTTCC AGATGGCGCT GCGCAAGCTA
GGTTATTCCG GTAACACTAC CGATCCGAAA GAGATCGAAG CGGCATATGA AGAGTTGAAA
AAACTGATGC CGAACGTAGC GGCCTTCAAC TCCGATAATC CGGCGAATCC GTATATGGAA
GGGGAAGTCA ATCTGGGGAT GGTGTGGAAC GGTTCGGCCT TCGTTGCTCG TCAGGCTGGC
ACGCCGCTGG AGGTCGTCTG GCCGAAAGAA GGCGGTATTT TCTGGATGGA TAGCCTGGCT
ATTCCGGCAA ACGCGAAAAA TAAAGAGGGC GCGCTGAAGC TAATCAACTT CCTGCTGCGT
CCTGACGTCG CGAAAGAGGT GGCAGAAACC ATCGGCTACC CTACCCCCAA CCTGGCGGCG
CGTAAGCTGT TAAGCCCGGA GGTCGCCAAT GATAAGTCGC TCTATCCGGA TGCGCAAACC
ATCAGCAAAG GCGAGTGGCA AAACGATGTC GGCGACGCCA GCGCCATTTA TGAAGAGTAT
TATCAGAAGC TAAAAGCAGG ACGCTAA
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| Protein sequence | MKKWSRHLLA AGALALGMSA AHASDNDTLY FYNWTEYVPP GLLEQFTKET GIKVIYSTYE
SNETMYAKLK TYKDGAYDLV VPSTYYVDKM RKEGMIQKID KSKLTNFHNL DPEMLNKPFD
PNNDYSVPYI WGATAIGVNS DAIDPKTITS WADLWKPEYK NSLLLTDDAR EVFQMALRKL
GYSGNTTDPK EIEAAYEELK KLMPNVAAFN SDNPANPYME GEVNLGMVWN GSAFVARQAG
TPLEVVWPKE GGIFWMDSLA IPANAKNKEG ALKLINFLLR PDVAKEVAET IGYPTPNLAA
RKLLSPEVAN DKSLYPDAQT ISKGEWQNDV GDASAIYEEY YQKLKAGR
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