Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2129 |
Symbol | |
ID | 6875297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 2042716 |
End bp | 2043453 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642785235 |
Product | RNA pseudouridine synthase family protein |
Protein accession | YP_002215898 |
Protein GI | 198244181 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 0.00417959 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTTGTA ATGAGCATGT CAATACTACC CTATTGTTTG CCGCCATGAA AGACACTCAT TATTGCGCTA TAATGCGGCA ATTAATAAGT TCTGAAAACA CCATGCAAAA AACTTCTTTT AGAAATCACT ACGTTAAGCG ATTCAGCTCA CGACAAGCAT CTAAATCACG GAAAGAAAAC CAGCCAAAAC GCGTGGTTTT GTTCAATAAA CCTTACGATG TGTTGCCGCA GTTCACGGAT GAAGCAGGTC GCCGCACGTT AAAAGATTTT ATTCCTGTGC AAGGCGTTTA TGCCGCAGGC CGCCTGGACC GCGACAGCGA AGGGCTTTTG GTGCTGACTA ATGACGGCGC GCTGCAGGCG CGCCTCACGC AACCGGGCAA ACGCACCGGC AAGATTTACT ATGTTCAGGT AGAAGGCATC CCGGATAATG CAGCGCTGCA GGCGCTTCGT ACTGGCGTCA CGCTCAACGA TGGCCCTACC CTGCCCGCCG GTATTGAGAT TGTCGCGGAG CCTGACTGGC TGTGGCCGCG CACCCCGCCG ATTCGCGAAC GGAAGAATAT TCCCACCAGT TGGCTAAAAG TCACCTTATA TGAAGGCCGC AACCGCCAGG TAAGACGCAT GACAGCGCAT GTCGGTCATC CCACTCTACG ATTAATTCGT TACAGCATGG GCGACTACAC GCTCAACGGC CTCGATAATG GACAGTGGTG CGAGATCGCA CAGGAGAAAG ACAGATGA
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Protein sequence | MFCNEHVNTT LLFAAMKDTH YCAIMRQLIS SENTMQKTSF RNHYVKRFSS RQASKSRKEN QPKRVVLFNK PYDVLPQFTD EAGRRTLKDF IPVQGVYAAG RLDRDSEGLL VLTNDGALQA RLTQPGKRTG KIYYVQVEGI PDNAALQALR TGVTLNDGPT LPAGIEIVAE PDWLWPRTPP IRERKNIPTS WLKVTLYEGR NRQVRRMTAH VGHPTLRLIR YSMGDYTLNG LDNGQWCEIA QEKDR
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