Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1934 |
Symbol | |
ID | 6874182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1867022 |
End bp | 1867771 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 642785056 |
Product | type III secretion apparatus lipoprotein, YscJ/HrcJ family |
Protein accession | YP_002215722 |
Protein GI | 198244261 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.464381 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 76 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGTTC ATCGTATAGT ATTTCTTACT GTCCTTACGT TCTTTCTTAC GGCATGTGAT GTGGATCTTT ATCGCTCATT GCCAGAGGAT GAGGCGAATC AAATGCTGGC ATTACTTATG CAGCATCATA TTGATGCGGA AAAAAAACAG GAAGAGGACG GTGTTACCTT ACGTGTCGAG CAGTCGCAGT TTATTAATGC GGTTGAGCTA CTTAGACTTA ACGGTTATCC GCATCGTCAG TTTACAACGG CGGATAAGAT GTTTCCGGCT AATCAGTTAG TGGTATCACC CCAGGAAGAA CAGCAGAAGA TTAATTTTTT AAAAGAACAA AGAATTGAAG GAATGCTGAG TCAGATGGAG GGCGTGATTA ATGCAAAAGT GACCATTGCG CTACCGACTT ATGATGAGGG AAGTAACGCT TCTCCGAGCT CAGTTGCCGT ATTTATAAAA TATTCACCAC AGGTCAATAT GGAGGCCTTT CGGGTAAAAA TTAAGGATTT AATAGAGATG TCAATCCCTG GGTTGCAATA CAGTAAGATT AGTATCTTGA TGCAGCCTGC TGAATTCAGA ATGGTAGCTG ACGTACCCGC GAGACAAACA TTCTGGATTA TGGACGTTAT CAACGCCAAT AAAGGGAAGG TGGTGAAGTG GTTGATGAAA TACCCTTATC AGTTGATGTT ATTGTTGACA GGACTGTTAT TAGGAGTGGG CATCCTGATC GGCTATTTTT GCCTGAGACG CCGTTTTTGA
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Protein sequence | MKVHRIVFLT VLTFFLTACD VDLYRSLPED EANQMLALLM QHHIDAEKKQ EEDGVTLRVE QSQFINAVEL LRLNGYPHRQ FTTADKMFPA NQLVVSPQEE QQKINFLKEQ RIEGMLSQME GVINAKVTIA LPTYDEGSNA SPSSVAVFIK YSPQVNMEAF RVKIKDLIEM SIPGLQYSKI SILMQPAEFR MVADVPARQT FWIMDVINAN KGKVVKWLMK YPYQLMLLLT GLLLGVGILI GYFCLRRRF
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