| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1853 |
|---|
| Symbol | |
|---|
| ID | 6871629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1794145 |
|---|
| End bp | 1795398 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642784983 |
|---|
| Product | inner membrane transport protein YnfM |
|---|
| Protein accession | YP_002215651 |
|---|
| Protein GI | 198241768 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCGTA CAACTATTCT CGATGACGCC ACGGCGAGCG ATATCGATGA ACAACGCCAT
TCTCAGCCGG TTCAATTTAT TAAACGCGGT ACAGCGCCTT TCATGCGCGT CACGCTGGCC
CTTTTTTCCG CGGGCCTGGC GACTTTCGCG CTCCTTTATT GCGTTCAGCC TATACTACCG
GTACTTTCCC AGGAGTTTGG CGTCTCCCCC GCCAGCAGCA GCGTTTCACT TTCTATTTCT
ACCGCCATGC TGGCTATCGG CTTACTTTTT ACCGGCCCGC TTTCTGATGC GATAGGCCGT
AAACCGGTGA TGGTCACCGC CTTGTTATTA GCCTCCTGCT GCACATTGTT ATCAACCATG
ATGACCAGCT GGCATGGTAT TCTGATTATG CGCGCGCTGA TCGGTCTGTC GTTAAGCGGC
GTCGCCGCGG TGGGAATGAC CTACCTGAGC GAAGAAATCC ATCCCAGCTT TGTCGCTTTC
TCTATGGGGC TTTATATTAG CGGTAATTCC ATCGGCGGGA TGAGCGGGCG TTTATTAAGC
GGCGTCATGA CCGACTTTTT TAACTGGCGC ATCGCGCTGG CGGCCATCGG ATGCTTTGCG
CTGGCGTCCG CGCTGATGTT CTGGAAGATT TTACCCGCCT CGCAACATTT CCGTCCCACG
TCGCTACGGC CTAAAACGCT ATTTATTAAT TTCCGTCTCC ACTGGCGCGA TCGGGGGTTA
CCTCTACTGT TTGCAGAAGG TTTTTTACTG ATGGGCGCGT TCGTCACCCT GTTTAACTAC
ATTGGTTATC GCCTGATGCT CTCCCCCTGG GAATTAAGCC AGGCCGTGGT CGGACTGTTA
TCCGTAGCCT ATCTCACCGG CACATGGAGC TCGCCGAAAG CTGGCGCCAT GACCTCACGC
TATGGCCGGG GGCCGGTGAT GCTGTTCTCT ACCGCAGTAA TGCTGGGTGG GCTTTTACTG
ACGCTTTTTA CCTCGCTTTG GCTGATTTTT GCTGGGATGC TGCTTTTTTC CGCCGGCTTT
TTCGCCGCGC ACTCCGTGGC CAGTAGCTGG ATTGGCCCGC GTGCGCGTCG GGCGAAGGGA
CAGGCCTCGT CACTTTATCT TTTCAGCTAT TATCTGGGGT CCAGTATTGC CGGGACGCTA
GGCGGTGTAT TCTGGCATAG TTACGGCTGG AACGGCGTAG GTGGTTTTAT CGCGCTAATG
CTGGTGCTGG CCATCCTGGT CGGGACGCGG TTACATCACC GTCTTCATGC CTGA
|
|---|
| Protein sequence | MSRTTILDDA TASDIDEQRH SQPVQFIKRG TAPFMRVTLA LFSAGLATFA LLYCVQPILP
VLSQEFGVSP ASSSVSLSIS TAMLAIGLLF TGPLSDAIGR KPVMVTALLL ASCCTLLSTM
MTSWHGILIM RALIGLSLSG VAAVGMTYLS EEIHPSFVAF SMGLYISGNS IGGMSGRLLS
GVMTDFFNWR IALAAIGCFA LASALMFWKI LPASQHFRPT SLRPKTLFIN FRLHWRDRGL
PLLFAEGFLL MGAFVTLFNY IGYRLMLSPW ELSQAVVGLL SVAYLTGTWS SPKAGAMTSR
YGRGPVMLFS TAVMLGGLLL TLFTSLWLIF AGMLLFSAGF FAAHSVASSW IGPRARRAKG
QASSLYLFSY YLGSSIAGTL GGVFWHSYGW NGVGGFIALM LVLAILVGTR LHHRLHA
|
|---|
| |