Gene SeD_A1852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1852 
Symbol 
ID6875064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1793126 
End bp1794025 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content57% 
IMG OID642784982 
ProductLysR substrate binding domain-containing protein 
Protein accessionYP_002215650 
Protein GI198242382 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATCG AATTACGTCA TTTACGTTAC TTTGTGGCGG TAGCAGAAGA GCTGCATTTT 
GGTCGCGCCG CCGCGCGCCT CAATATCTCG CAGCCGCCGC TGAGTCAGCA GATACAAATT 
CTGGAGCAGC AGGTCGGCGC GCGATTACTG GCGCGGACTA ACCGCAGCGT AGCGTTAACC 
GCCGCCGGGC GACAGTTTCT GGTGGATAGC CGACACATCC TGAGTCTGGT AAACGACGCC 
GCCGCTCGCG CCGAGCGGTT GCATCAGGGC GAAGCGGGTG AAATCCGTAT TGGCTTTACG 
TCTTCAGCGC CTTTTATTCG GGCGGTATCG CATACCTTTT CGCTGTTCCG CCAGTCCTAT 
CCGGGGGTGC ATATGCAAAC GCGTGAAATG AATACGCGTG AGCAAATCGC GCCGCTCAAC 
GAAGGCGTAC TGGATATTGG CTTACTGCGG AATACGCCGT TGCCCGACAC ACTTAATCGC 
GAGGTGATTT TGCATGAGCC GCTTATGGCC ATGATCCCGC GCGAACATCG GCTGGCGCAA 
AAGCCGGTCG TCAGTCTGAC AGAACTGGCG GAAGAACCTT TCGTCTTTTT CGATCCGCAT 
GTCGGGACGG GCCTCTACGA CGATATCCTC GGCCTGATGC GGCGCTATAA CCTGTCGCCG 
ACCATCACCC AGGAGGTTGG CGAGGCAATG ACCATTATCG GTCTGGTAGC GGCGGGACTG 
GGTGTCTCGA TTCTGCCGGC ATCCTTTAAG CGTGTACAGA TGAGCGAGAT GCGCTGGGTT 
CCCCTGGCGG AAGAGGACGC CGTATCTGAA ATGTGGCTGG TATGGCCAAA GCATCATGAA 
CAGAGTCATG CCGTACAGCG GTTTTGCCAA CTGCTATTAC TGGCTGCCCG ACGGGATTAA
 
Protein sequence
MNIELRHLRY FVAVAEELHF GRAAARLNIS QPPLSQQIQI LEQQVGARLL ARTNRSVALT 
AAGRQFLVDS RHILSLVNDA AARAERLHQG EAGEIRIGFT SSAPFIRAVS HTFSLFRQSY 
PGVHMQTREM NTREQIAPLN EGVLDIGLLR NTPLPDTLNR EVILHEPLMA MIPREHRLAQ 
KPVVSLTELA EEPFVFFDPH VGTGLYDDIL GLMRRYNLSP TITQEVGEAM TIIGLVAAGL 
GVSILPASFK RVQMSEMRWV PLAEEDAVSE MWLVWPKHHE QSHAVQRFCQ LLLLAARRD