| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1547 |
|---|
| Symbol | prfA |
|---|
| ID | 6871944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1494160 |
|---|
| End bp | 1495242 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642784699 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_002215369 |
|---|
| Protein GI | 198242115 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.891695 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 0.256018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCTT CTATCGTTGC CAAACTGGAA GCCCTGCACG AACGCCATGA GGAAGTTCAG
GCGTTGCTGG GCGATGCGGG AATTATTGCC GACCAGGACC GCTTTCGCGC ATTGTCGCGC
GAATATGCGC AATTAAGCGA CGTTTCTCGC TGTTTTACGG ACTGGCAACA GGTTCAGGAC
GATATCGAGA CGGCTCAGAT GATGCTCGAC GATCCTGAAA TGCGAGAAAT GGCGCAGGAA
GAACTGCGCG AAGCGAAAGA AAAAAGCGAA CAACTGGAGC AACAGTTACA GGTACTGCTG
CTGCCGAAAG ATCCGGACGA TGAACGAAAC GCGTTCCTTG AGGTTCGCGC CGGTACCGGC
GGCGACGAAG CCGCGCTGTT TGCCGGCGAT CTGTTCCGCA TGTACAGCCG TTATGCCGAA
GCGCGCCGCT GGCGCGTGGA GATCATGAGC ATGAGCGAAG GCGAGCATGG CGGTTATAAA
GAGATCATCG CCAAAATCAG CGGCGACGGG GTGTATGGCC GACTGAAGTT TGAGTCCGGC
GGACACCGCG TACAGCGTGT TCCGGCGACC GAGTCGCAGG GGCGTATCCA TACCTCCGCC
TGTACCGTCG CCGTGATGCC GGAGCTGCCG GAAGCCGAGC TGCCGGATAT TAACCCGGCG
GATCTGCGCA TTGATACGTT TCGTTCTTCC GGCGCGGGCG GTCAGCACGT TAACACCACC
GACTCCGCTA TCCGTATTAC CCACTTGCCG ACCGGCATCG TGGTGGAATG CCAGGACGAG
CGTTCGCAGC ATAAAAACAA AGCGAAAGCG CTCTCGGTGC TCGGGGCGCG CATTCACGCC
GCCGAAACGG CAAAACGCCA GCAGGCCGAG GCGTCAACGC GCCGCAACCT GCTTGGCAGC
GGCGATCGCA GCGATCGTAA CCGGACCTAT AATTTCCCGC AGGGGCGCGT GACCGATCAT
CGTATTAATC TGACGTTATA TCGCCTTGAT GAAACGATGG AAGGTAAGCT GGATATGCTG
ATTGAGCCGA TTGTTCAGGA ACACCAGGCT GACCTGTTAG CCGCCTTATC CGAGCAGGAA
TAA
|
|---|
| Protein sequence | MKPSIVAKLE ALHERHEEVQ ALLGDAGIIA DQDRFRALSR EYAQLSDVSR CFTDWQQVQD
DIETAQMMLD DPEMREMAQE ELREAKEKSE QLEQQLQVLL LPKDPDDERN AFLEVRAGTG
GDEAALFAGD LFRMYSRYAE ARRWRVEIMS MSEGEHGGYK EIIAKISGDG VYGRLKFESG
GHRVQRVPAT ESQGRIHTSA CTVAVMPELP EAELPDINPA DLRIDTFRSS GAGGQHVNTT
DSAIRITHLP TGIVVECQDE RSQHKNKAKA LSVLGARIHA AETAKRQQAE ASTRRNLLGS
GDRSDRNRTY NFPQGRVTDH RINLTLYRLD ETMEGKLDML IEPIVQEHQA DLLAALSEQE
|
|---|
| |