Gene SeD_A1457 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1457 
Symbol 
ID6873985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1414970 
End bp1415692 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content42% 
IMG OID642784613 
Productguanine nucleotide exchange factor SopE 
Protein accessionYP_002215283 
Protein GI198244228 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.349784 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value0.474266 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTAACA TAACACTATC CACCCAGCAC TACAGAATCC ATAGAAGTGA CGTTGAACCA 
GTAAAAGAAA AAACAACGGA GAAGGACATT TTTGCAAAAA GTATTACTGC CGTTAGAAAT 
AGCTTTATCA GCCTGTCGAC GAGTCTGTCA GATCGTTTTA GCCTGCATCA ACAAACAGAC 
ATACCGACTA CCCATTTTCA TCGTGGGAAC GCTTCTGAGG GTAGGGCGGT ATTAACCAGT 
AAAACTGTTA AAGATTTTAT GCTGCAAAAG CTCAATAGTC TGGATATCAA AGGTAATGCG 
AGTAAAGATC CGGCCTATGC TCGTCAGACA TGCGAAGCCA TATTATCAGC CGTGTACAGT 
AATAATAAAG ATCAATGTTG TAAATTACTC ATCAGTAAAG GGGTCAGTAT TACCCCCTTT 
TTGAAAGAGA TAGGAGAGGC TGCGCAGAAT GCGGGGCTAC CTGGGGAGAT AAAAAATGGC 
GTATTTACTC CAGGTGGGGC AGGGGCGAAT CCTTTTGTCG TCCCCCTCAT TGCTTCCGCG 
AGTATTAAAT ATCCGCATAT GTTTATAAAT CATAATCAGC AGGTATCTTT TAAAGCGTAT 
GCTGAGAAAA TCGTTATGAA AGAGGTTACG CCGCTGTTTA ATAAGGGGAC GATGCCAACG 
CCACAACAAT TTCAGTTAAC TATAGAAAAT ATTGCGAATA AGTATCTTCA GAATGCCTCC 
TGA
 
Protein sequence
MTNITLSTQH YRIHRSDVEP VKEKTTEKDI FAKSITAVRN SFISLSTSLS DRFSLHQQTD 
IPTTHFHRGN ASEGRAVLTS KTVKDFMLQK LNSLDIKGNA SKDPAYARQT CEAILSAVYS 
NNKDQCCKLL ISKGVSITPF LKEIGEAAQN AGLPGEIKNG VFTPGGAGAN PFVVPLIASA 
SIKYPHMFIN HNQQVSFKAY AEKIVMKEVT PLFNKGTMPT PQQFQLTIEN IANKYLQNAS