Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1418 |
Symbol | |
ID | 6873161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1386003 |
End bp | 1386500 |
Gene Length | 498 bp |
Protein Length | 165 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642784584 |
Product | attachment/invasion protein |
Protein accession | YP_002215254 |
Protein GI | 198244814 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.0141818 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA TTGTCGTGGC GGTTTTAGTT GGTCTGGCGT TAGGTAGCAT CGGCGTGGCT AACGCAGCAG GGTATAAAAA TACCGTTTCA ATTGGATATG CCTACACAGA TTTAAGCGGC TGGCTTTCCG GTAATGCGAA CGGTGCCAAC ATCAAATATA ACTGGGAAGA TCTGGACAGT GGATTCGGGG CGATGGGTTC AGTTACATAC ACCTCGGCTG ATGTTAATAA CTATGGGTAT AAGGTAGGTG ATGCTGATTA TACCTCCCTT CTTGTTGGTC CTTCATACCG TTTTAACGAC TATCTGAATG CTTACGTGAT GATTGGTGCA GCAAACAGAC ATATTAAGGA TAACTGGGGA AATTCTGACA ATAAAACCGC CTTTGCTTAT GGGGCAGGTA TTCAGCTTAA CCCGGTTGAA AATATTGCCG TTAATGCGTC TTATGAGCAT ACAAGTTTTT CCACTGATGC TGACAGTGAC GTCAAAGCTG GAACCTAG
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Protein sequence | MKKIVVAVLV GLALGSIGVA NAAGYKNTVS IGYAYTDLSG WLSGNANGAN IKYNWEDLDS GFGAMGSVTY TSADVNNYGY KVGDADYTSL LVGPSYRFND YLNAYVMIGA ANRHIKDNWG NSDNKTAFAY GAGIQLNPVE NIAVNASYEH TSFSTDADSD VKAGT
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