Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1408 |
Symbol | |
ID | 6871388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1377272 |
End bp | 1379326 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642784574 |
Product | ATP-dependent protease |
Protein accession | YP_002215244 |
Protein GI | 198242377 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.104115 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.000644227 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCCGCCGG TGATGACAGC AGGGAACGGA CGCGGGGAGG GAAGCAGTAA TAGCTGGTAT TCCATCAGGG CTGCAGCCAA TAACACGGCG GAAGTCCGCA TTTATGACGA GATTGGTGGA TGGGGAATTT CGGCTCGCTG GTTTGCAGAA GAACTGGCTG CACTGGGACA GATTAACCGG ATAAATCTGC ATATTCATTC ACCTGGCGGA GCAGTACTGG ACGGAATAGC CATTTATAAC CTCCTGAAAA ATCATCCGGC GCAAAAAACG GTGTATATCG ATGGAATGGC CTGCTCAATG GCATCCGCTA TTGCGATGGT AGGTAATCCC ATCATTATGC CGGAAAACGC CATGATGATG ATTCATAAGC CGCGCGGAGT GGCGGGGGGT GAGGCGGAGG ATATCCGGGA ATATGCTGAC CTGCTTGACA AGATCGAAAG CGTCATTATC CCCATCTATA CCGAAAAAAC TGGAAAAACG CCTGAAGATA TTGCTGCCAT GCTGGCAAAG GAGACCTGGA TGAGCGGCGC GGAGTGCGTC AGTGAAGGGT TTGCCGACAA ACTGATACAG CCTGTAAAAG CAATGGCCTG TATTCATTCA AAACGTGTTG AGGAGTTTGA GCATATGCCA CAGAGCATTA AAGGTATGAT TATCGCCCCG CAGGGCAATG CAGGCGCGCA ACCGCAGCCA CAGGCAAAAG CCCCTGAGTC ACAGATTCAG TCGCAGGCTC AGTCGCTGGT GACTGTAGAT GAAAATGCCA TTCGCGCACG CCTGCAGGAA GAACAGCGTA ACCGTATCAC CGGCATTCAG AATGTGTTTT CACTTTCCGG CGATCGTTAT GCCTCGCTGA TGGCAAAGTG CATTGCTGAT GTGGATTGCT CTCTGGAAAT GGCGAAGGAC AGACTGTTGG CCGAGATGGC GAAAGGTATT ACGCCGACTA ACCAGCTGAA CGGTCCGCAG AATCGCGCAG AGTTTCATGC CGGGATGTAT ACCGGAAACG GTAATATTAC CGGCGACGCC GTTCGCGCTG CCGTGATGGC CCGCGCAGGC TATGAAGAAG CGCAGAAGGA TAACCCGTAC AACTGTATGA CCCTGCGTGA ACTGGCGCGA ATTTCGCTGG TGGCGAGGGG TACAGGCGTG TCCAGCATGA ATCCCATGCA GATGATCGGC ATGGCATTTA CGCACAGCAC CTCCGATTTC GGTAACATTC TGCTGGATGT TGCAAACAAG TCCATTCTGC AGGGCTGGCA GGAAGCGCCG GAAACCTTCG ATGCCTGGAC CAAAAAAGGA CAGTTGTCTG ATTTCAGGAT TGCGCACCGT GTGGGTATGG GGGGATTCAG TTCACTGCGT CAGGTTCGTG AAGGAGCGGA ATACAAATAC GTCACCACAG GGGATAAACA GGCGACCATT GCGCTCGCTA CCTATGGGGA GCTGTTCAGC ATTACCCGCC AGGCCATCAT CAATGATGAT ATGAATATGC TGACGGATGT CCCGATGAAG CTGGGACGTG CGGCAAAAGC CACCATTGCC GATCTGGTTT ATGACGTTCT CATCAGTAAC CAGAAACTGT CCAGTGATAA TGTGGCGCTG TTTGACAAGA CGAAACACGC AAACGTCCTT GAAAAAGCCG TTATGGATGT GGCGTCCCTG GATAAAGCGC GCCAGCTAAT GCGGATGCAG AAAGAGGGCG ATCGCCACCT CAATATCCGT CCGGCATTTG TACTGGTGCC GACGGCGATG GAGTCTGTTT CAAATCAGGT GATTAAATCT GTCAGTGTCA AGGGGGCGGA TATTAACGCC GGGATCATTA ACCCGGTGAA AGATTTCGCC ACGGTGATCG CGGAGCCTCG TCTTGATGAC GCCAGTCAGT CCACTTTCTA TCTTACTGCA GCAAAAGGCA GCGATACCGT TGAGGTGGCT TACCTTAACG GCGTGGATGA GCCGTATATC GACCAGCAGG AAGGATTCAC GGTGGATGGC GTAACCACGA AAGTTCGTAT TGATGCGGGC GTTGCGCCGG TGGATTATCG CGGCATGGTG AAATGCACCG TATAA
|
Protein sequence | MPPVMTAGNG RGEGSSNSWY SIRAAANNTA EVRIYDEIGG WGISARWFAE ELAALGQINR INLHIHSPGG AVLDGIAIYN LLKNHPAQKT VYIDGMACSM ASAIAMVGNP IIMPENAMMM IHKPRGVAGG EAEDIREYAD LLDKIESVII PIYTEKTGKT PEDIAAMLAK ETWMSGAECV SEGFADKLIQ PVKAMACIHS KRVEEFEHMP QSIKGMIIAP QGNAGAQPQP QAKAPESQIQ SQAQSLVTVD ENAIRARLQE EQRNRITGIQ NVFSLSGDRY ASLMAKCIAD VDCSLEMAKD RLLAEMAKGI TPTNQLNGPQ NRAEFHAGMY TGNGNITGDA VRAAVMARAG YEEAQKDNPY NCMTLRELAR ISLVARGTGV SSMNPMQMIG MAFTHSTSDF GNILLDVANK SILQGWQEAP ETFDAWTKKG QLSDFRIAHR VGMGGFSSLR QVREGAEYKY VTTGDKQATI ALATYGELFS ITRQAIINDD MNMLTDVPMK LGRAAKATIA DLVYDVLISN QKLSSDNVAL FDKTKHANVL EKAVMDVASL DKARQLMRMQ KEGDRHLNIR PAFVLVPTAM ESVSNQVIKS VSVKGADINA GIINPVKDFA TVIAEPRLDD ASQSTFYLTA AKGSDTVEVA YLNGVDEPYI DQQEGFTVDG VTTKVRIDAG VAPVDYRGMV KCTV
|
| |