Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1227 |
Symbol | |
ID | 6873167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1221466 |
End bp | 1223319 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642784406 |
Product | hypothetical protein |
Protein accession | YP_002215079 |
Protein GI | 198243146 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.366123 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATTCG AAGAACGCTA TTACAGGCAG GAGTTGGATC ACCTGCGGCA GTTGAGCAAG CTGCTGGCGA CCGAAAAGCC GCATCTGGCC CGGTTTCTGG CAGAAAAAGA GGCCGATCCG GATATCGAGC GTCTGCTGGA GGGCGTGGCC TTTCTGACCG GCAATCTGCG CCAGAAAATC GAGGATGAGT TTCCGGAGCT GACGCACGGA CTGATCCGGA TGCTGTGGCC CAATTATCTG CGCCCGGTGC CGTCGATGAC GCTGATTGAA TATACGCCGG ATATGGATAA AACTTCCGTG CCGGTACTGA TCCCCCGTAA TGAGCAGTTC ACAACCGGGG CGAAGGGGAC TCAGGGAAAC CCGGTATTGT CTGCGTATTC CGGCAATGAG CACGATGTAG CCCCGCCCTG TACGTTCACC CTGTGCCGGG ATATCTGGCT GTTACCCGTT CAACTGGATC AGGTTGAAAA TCGCAGTACG CCCCGCCACG GCATTATTGA TATTACGTTT GCCGTCGCAC CGGGCACTGA TTTTGCCACG CTGGATCTGA ACAGGCTGCG CTTCTGGCTG GGCAACGATG ATAACTATAC CCGCTATCAG CTTTATCTGT GGTTTTGTGA ATATTTACAG GGCGCAGAGT TGATGGCGGG CGGGCAGTCG AGCCCGATGC CTGAATTTAT GCTGAAAGCG GTGGGTTTTG AGTCAGAGGA CGCCATGCTG CCCTGGCCCG GCAATGTCCA CAGCGGCTAC CGCATTCTCC AGGAGTTTTT CTGCTACGCC GACAGTTTTC TGTTTTTCGA TGCCTGTGGC ATTCCGGCAT TGCCAGACAG GTTAAAGGAG AACCGTTTCA CTCTGCGGCT GCGGTTTTCT CGCCCCTTAC CGGCAGATAT CCGGCTGCGG GATGATTCCC TGCGCTTATA TTGTGCGCCC GCCATTAATC TGTTTGCCCA CCATGCCGAA GCCATCACGC TGGATCATCA GCGGCAGGAT TACGCTCTGG TTCCCAGCCG TCATTTTCCG GATCATTACG ACATTTTTTC GGTTAACAGC GTGGTGAGTC AGACGCAGGG GAAGCAGAGA AAAGCGGATC TTGGACGGCC GGTGATCACA GAGGCCGCGC GCCACTGGCC TGCTTTTGAG AGTTTCCGCC ACCAGATGGA GTACAGCCGT AAGCGGGAAG TGGTCTACTG GCAGCACCGG ACCAGGACCT CGCTGTTTCA CCGGGGCTTT GATCATACCC TAGCTTTTAT TCATGCCGAT GGCAGCCTCC CGGATGCCTC ACTGCTTAAT AATGAAGTGG TTTCTGTATC GCTGACCTGC ACCAACCGGG AGCTGCCGGT ACAGCTACGG CCCGGCGATA TCACCGGTAC GACAGGTAAA AACGCGTCGG TGGCGTCATT TCGCAATATC ACCCGCCCCA CCAGACCGCT CTGGCCGGTG ATTGACGGCA GCCTGCACTG GTCGTTGCTG TCTGCCATGA ACCTGAATTA TCTGTCGTTG CTGGATGCTG ATGCGCTCAA ACAGGTGATC GCCAATTTTG ATCGCCACGC CATCCATCAT CCGCAGATGG CCCGTCTGTC ACAGCAGAAG CTGGACGCCA TTGAACGGCT GGAAACAACC CCGGTTGATC GCCTGTTTAC CGGCATACCG GTGCGCGGGC TGGCGTCCAC CCTGTCCATT CATCCGGAGC CGTTTGTCTG CGAGGGTGAA ATGTACCTGC TGGGCGCGGT GCTGTCGCAT TTTCTGTCGC TGTACGCCAG CGTCAATTCG TTCCACATGC TGACCGTCGT TAACACGGAA AGCCAGGAGT CATGGAAATG GGCGGAAAGA ACCGGGCAAC ACCCGCTCAT CTGA
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Protein sequence | MEFEERYYRQ ELDHLRQLSK LLATEKPHLA RFLAEKEADP DIERLLEGVA FLTGNLRQKI EDEFPELTHG LIRMLWPNYL RPVPSMTLIE YTPDMDKTSV PVLIPRNEQF TTGAKGTQGN PVLSAYSGNE HDVAPPCTFT LCRDIWLLPV QLDQVENRST PRHGIIDITF AVAPGTDFAT LDLNRLRFWL GNDDNYTRYQ LYLWFCEYLQ GAELMAGGQS SPMPEFMLKA VGFESEDAML PWPGNVHSGY RILQEFFCYA DSFLFFDACG IPALPDRLKE NRFTLRLRFS RPLPADIRLR DDSLRLYCAP AINLFAHHAE AITLDHQRQD YALVPSRHFP DHYDIFSVNS VVSQTQGKQR KADLGRPVIT EAARHWPAFE SFRHQMEYSR KREVVYWQHR TRTSLFHRGF DHTLAFIHAD GSLPDASLLN NEVVSVSLTC TNRELPVQLR PGDITGTTGK NASVASFRNI TRPTRPLWPV IDGSLHWSLL SAMNLNYLSL LDADALKQVI ANFDRHAIHH PQMARLSQQK LDAIERLETT PVDRLFTGIP VRGLASTLSI HPEPFVCEGE MYLLGAVLSH FLSLYASVNS FHMLTVVNTE SQESWKWAER TGQHPLI
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