| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1198 |
|---|
| Symbol | putA |
|---|
| ID | 6873864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1186097 |
|---|
| End bp | 1190059 |
|---|
| Gene Length | 3963 bp |
|---|
| Protein Length | 1320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642784381 |
|---|
| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_002215054 |
|---|
| Protein GI | 198244226 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAACCA CCACGATGGG GGTTAAGCTG GACGACGCCA CGCGCGAACG GATCAAAATG
GCCGCGTCGC GTATCGATCG CACGCCGCAC TGGTTAATAA AACAGGCAAT CTTTAGCTAT
CTGGACAAGC TGGAAAATAG CGATACGCTA CCGGAGCTAC CTGCGCTGTT TGCCGGCGCG
GCAAATGAAA GCGAGGAGCC GGTCGCGCCG CAGGATGAGC CGCATCAGCC CTTTCTGGAG
TTTGCCGAAC AGATTCTTCC CCAATCCGTC TCTCGCGCCG CCATCACCGC CGCCTGGCGC
CGCCCGGAAA CCGATGCGGT ATCAATGCTA ATGGAACAGG CGCGCCTGTC GCCGCCTGTC
GCTGAGCAGG CGCATAAACT GGCGTATCAA CTGGCGGAGA AATTGCGCAA TCAAAAATCC
GCCAGCGGTC GCGCGGGTAT GGTACAAGGC CTGTTGCAGG AGTTTTCCCT CTCTTCGCAA
GAAGGCGTAG CGCTGATGTG TCTGGCGGAA GCGCTGCTGC GTATTCCTGA CAAAGCTACG
CGCGATGCGT TAATTCGCGA CAAAATCAGT AATGGCAACT GGCAGTCGCA TATTGGCCGT
AGCCCGTCAC TGTTTGTAAA TGCCGCCACC TGGGGGCTGC TCTTTACCGG CCGACTGGTC
TCAACGCATA ACGAAGCCAA TCTATCGCGC TCGCTGAACC GCATTATCGG CAAGAGCGGC
GAACCGTTAA TCCGCAAAGG CGTCGACATG GCGATGCGTT TAATGGGCGA GCAGTTCGTG
ACTGGTGAAA CCATTGCTCA GGCGCTGGCG AATGCCCGAA AACTGGAAGA GAAAGGGTTC
CGCTATTCTT ACGATATGCT GGGCGAAGCC GCGTTAACCG CCGCCGATGC GCAGGCTTAT
ATGGTCTCTT ACCAGCAAGC GATTCATGCC ATCGGCAAAG CGTCTAACGG TCGCGGTATT
TACGAAGGGC CAGGCATCTC AATTAAGCTG TCCGCCCTGC ATCCACGCTA TAGTCGTGCA
CAATACGATC GGGTAATGGA GGAGCTTTAT CCGCGCCTGA AATCCCTGAC GCTGCTGGCG
CGCCAGTATG ATATCGGTCT CAATATCGAC GCCGAAGAGG CGGATCGTCT GGAGATCTCG
CTCGATCTGC TGGAAAAACT CTGCTTCGAA CCCGAACTCG CAGGCTGGAA CGGCATTGGC
TTTGTGATCC AGGCTTACCA AAAACGCTGT CCACTGGTCA TTGATTATTT AGTCGATCTG
GCCTCCCGTA GCCGCCGTCG GCTGATGATT CGTCTGGTGA AAGGCGCCTA CTGGGATAGC
GAAATCAAAC GCGCGCAAAT GGAAGGGCTG GAGGGCTATC CGGTTTATAC CCGCAAAGTG
TATACCGATG TCTCTTATCT GGCCTGCGCG AAAAAACTGC TCGCCGTTCC TAATCTGATC
TACCCGCAGT TCGCGACCCA TAACGCTCAC ACACTGGCGG CGATTTATCA TCTGGCCGGG
CAAAATTACT ATCCGGGTCA GTACGAATTC CAGTGCCTGC ACGGCATGGG CGAACCGCTG
TATGAACAGG TCACCGGTAA AGTAGCGGAC GGAAAACTTA ACCGTCCCTG CCGTATTTAC
GCGCCGGTGG GAACACACGA AACCCTGCTG GCCTATCTGG TACGACGCCT GCTGGAAAAC
GGCGCCAACA CCTCTTTTGT CAACCGCATC GCCGATGCCA CCCTACCGCT CGATGAACTG
GTGGCCGACC CGGTCGATGC CGTGGAAAAA CTGGCGCAGC AGGAAGGTCA GGCTGGCATA
CCGCATCCGA AAATTCCGCT GCCGCGCGAT CTGTACGGCG AAGGTCGGAT AAACTCCGCC
GGACTTGATT TAGCGAATGA ACATCGCCTC GCCTCGCTTT CTTCTGCCCT GTTAAGCAAC
GCCATGCAGA AATGGCAGGC CAAACCTGTG CTGGAACAAC CGGTGGCCGA CGGTGAGATG
ACGCCGGTTA TCAACCCAGC GGAACCGAAA GATATTGTCG GCTGGGGACG CGAAGCGACA
GAAAGCGAAG CTGAACAGGC ATTGCAAAAC GCGGTCAATC AGGCACCGGT TTGGTTTGCG
ACGCCGCCGC AAGAACGCGC CGCCATTTTG CAGCGGGCGG CGGTATTAAT GGAAGACCAA
ATGCAGCAGT TGATTGGCCT GTTGGTACGT GAAGCGGGGA AAACGTTCAG CAACGCCATT
GCCGAAGTGC GCGAAGCGGT AGACTTCCTC TATTATTATG CCGGCCAAGT GCGTGACGAT
TTCGATAACG AAACGCATCG CCCGTTAGGG CCGGTAGTCT GCATCAGTCC GTGGAACTTC
CCGCTGGCCA TTTTCACCGG CCAAATCGCC GCCGCGCTGG CGGCAGGTAA CAGCGTTCTG
GCGAAACCGG CAGAGCAGAC ATCGCTGATT GCCGCCCAGG GCATTGCCAT TTTGCTGGAA
GCGGGCGTAC CGCCGGGCGT CGTGCAACTG TTGCCGGGAC GGGGAGAAAC CGTCGGCGCC
CAGCTTACCG CCGATGCGCG TGTACGCGGC GTGATGTTTA CCGGTTCCAC GGAGGTCGCG
ACGTTGTTGC AGCGCAACAT TGCCACACGT CTTGACGCCC AGGGCCGCCC TATTCCGTTG
ATTGCGGAAA CCGGCGGTAT GAACGCTATG ATTGTCGACT CTTCCGCGCT CACCGAGCAG
GTAGTCGTGG ATGTGCTGGC TTCCGCTTTC GACAGCGCCG GACAACGCTG TTCCGCGCTC
CGCGTGCTGT GTTTGCAGGA CGATATCGCC GAACATACGC TGAAAATGTT ACGCGGCGCG
ATGGCGGAGT GTCGGATGGG GAATCCAGGC CGTCTGACGA CCGATATCGG GCCGGTGATT
GATAGCGAGG CCAAAGCCAA CATCGAGCGT CATATCCAGA CGATGCGCGC CAAAGGCCGC
CCGGTTTTCC AGGCCGCGCG TGAAAACAAC GATGACGCGC AGGAATGGCA GACCGGTACG
TTTGTTATGC CCACGCTTAT TGAGCTGGAA AACTTCGCAG AACTGGAAAA AGAGGTCTTC
GGGCCCGTGC TGCATGTCGT GCGTTATAAC CGTAACCAAC TGGCGGAGCT TATCGAACAG
ATTAACGCTT CCGGCTACGG GCTAACGCTG GGCGTACATA CCCGTATTGA TGAAACCATT
GCGCAAGTCA CCGGTTCCGC CCATGTCGGC AACCTGTACG TTAACCGTAA TATGGTGGGC
GCGGTCGTCG GCGTCCAGCC GTTTGGCGGC GAAGGACTGT CCGGTACCGG GCCAAAAGCG
GGAGGGCCGC TCTATCTCTA CCGCCTGCTG GCACACCGCC CGCCCAATGC GCTCAATACG
ACGCTGACTC GTCAGGATGC GCGTTACCCG GTGGATGCGC AGCTTAAAAC CACGCTACTC
GCGCCGTTGA CCGCCCTGAC ACAATGGGCG GCGGATCGCC CGGCGCTACA GACGCTCTGC
CGACAATTCG CCGATCTGGC CCAGGCCGGC ACGCAGCGCC TGCTACCGGG GCCGACCGGC
GAGCGCAATA CCTGGACGTT GTTGCCGCGT GAACGGGTAT TATGCCTGGC TGATGATGAA
CAGGACGCGT TGACGCAGCT TGCCGCCGTT CTCGCCGTCG GCAGTCAGGC GCTATGGTCA
GACGACGCCT TCCACTGCGA TCTGGCGAAA CGTCTCCCCG CCGCCGCTGC GGCGCGTGTC
CAGTTTGCGA AAGCGGAAAC GCTGATGGCG CAGCCGTTTG ACGCGGTGAT TTTCCACGGC
GACTCCGACA AGCTGCGAAC CGTGTGCGAA GCCGTCGCCG CCCGCGAAGG CGCGATAGTG
TCGGTACAGG GTTTCGCCCG CGGCGAAAGC AATATACTGT TGGAACGGCT CTATATTGAA
CGTTCGCTGA GCGTAAACAC TGCCGCCGCT GGCGGTAATG CCAGCCTGAT GACAATTGGC
TAA
|
|---|
| Protein sequence | MGTTTMGVKL DDATRERIKM AASRIDRTPH WLIKQAIFSY LDKLENSDTL PELPALFAGA
ANESEEPVAP QDEPHQPFLE FAEQILPQSV SRAAITAAWR RPETDAVSML MEQARLSPPV
AEQAHKLAYQ LAEKLRNQKS ASGRAGMVQG LLQEFSLSSQ EGVALMCLAE ALLRIPDKAT
RDALIRDKIS NGNWQSHIGR SPSLFVNAAT WGLLFTGRLV STHNEANLSR SLNRIIGKSG
EPLIRKGVDM AMRLMGEQFV TGETIAQALA NARKLEEKGF RYSYDMLGEA ALTAADAQAY
MVSYQQAIHA IGKASNGRGI YEGPGISIKL SALHPRYSRA QYDRVMEELY PRLKSLTLLA
RQYDIGLNID AEEADRLEIS LDLLEKLCFE PELAGWNGIG FVIQAYQKRC PLVIDYLVDL
ASRSRRRLMI RLVKGAYWDS EIKRAQMEGL EGYPVYTRKV YTDVSYLACA KKLLAVPNLI
YPQFATHNAH TLAAIYHLAG QNYYPGQYEF QCLHGMGEPL YEQVTGKVAD GKLNRPCRIY
APVGTHETLL AYLVRRLLEN GANTSFVNRI ADATLPLDEL VADPVDAVEK LAQQEGQAGI
PHPKIPLPRD LYGEGRINSA GLDLANEHRL ASLSSALLSN AMQKWQAKPV LEQPVADGEM
TPVINPAEPK DIVGWGREAT ESEAEQALQN AVNQAPVWFA TPPQERAAIL QRAAVLMEDQ
MQQLIGLLVR EAGKTFSNAI AEVREAVDFL YYYAGQVRDD FDNETHRPLG PVVCISPWNF
PLAIFTGQIA AALAAGNSVL AKPAEQTSLI AAQGIAILLE AGVPPGVVQL LPGRGETVGA
QLTADARVRG VMFTGSTEVA TLLQRNIATR LDAQGRPIPL IAETGGMNAM IVDSSALTEQ
VVVDVLASAF DSAGQRCSAL RVLCLQDDIA EHTLKMLRGA MAECRMGNPG RLTTDIGPVI
DSEAKANIER HIQTMRAKGR PVFQAARENN DDAQEWQTGT FVMPTLIELE NFAELEKEVF
GPVLHVVRYN RNQLAELIEQ INASGYGLTL GVHTRIDETI AQVTGSAHVG NLYVNRNMVG
AVVGVQPFGG EGLSGTGPKA GGPLYLYRLL AHRPPNALNT TLTRQDARYP VDAQLKTTLL
APLTALTQWA ADRPALQTLC RQFADLAQAG TQRLLPGPTG ERNTWTLLPR ERVLCLADDE
QDALTQLAAV LAVGSQALWS DDAFHCDLAK RLPAAAAARV QFAKAETLMA QPFDAVIFHG
DSDKLRTVCE AVAAREGAIV SVQGFARGES NILLERLYIE RSLSVNTAAA GGNASLMTIG
|
|---|
| |