| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1175 |
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| Symbol | hpaR |
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| ID | 6874474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1166003 |
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| End bp | 1166443 |
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| Gene Length | 441 bp |
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| Protein Length | 146 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642784358 |
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| Product | homoprotocatechuate degradation operon regulator, HpaR |
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| Protein accession | YP_002215031 |
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| Protein GI | 198244532 |
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| COG category | [K] Transcription |
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| COG ID | [COG1846] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02337] homoprotocatechuate degradation operon regulator, HpaR |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.051458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATGATT CATTAACCAT CGCATTGCTT CAGGCGCGCG AAGCGGCAAT GACCTATTTC
CGCCCCATCG TTAAAAGCCA CAATCTGACC GACCAGCAAT GGCGCATTGT GCGAATCCTG
GCCGATAGCC CCTCTATGGA TTTTCACGAG CTGGCCTTTC GTACCTGCAT TTTGCGTCCA
AGTCTGACCG GAATATTGAC GCGCATGGAG CGAGACGGAC TGGTGTTGCG ACTCAAGCCG
GTTAACGATC AGCGTAAGTT ATATGTCATG TTGACGGAGC AGGGACAAAC GTTGTACGCC
CGTGCCCGGA GCCAGGTAGA AGAGGCTTAT CGAAAAATTG AGGCCGATTT CACGCCCGAA
AAAACACAGC AATTGATGCT GCTGCTGGAC GATCTTATTG CTCTGGGACG CCAGCATCCT
GATAGCGAAG CGGAAGCATA G
|
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| Protein sequence | MHDSLTIALL QAREAAMTYF RPIVKSHNLT DQQWRIVRIL ADSPSMDFHE LAFRTCILRP
SLTGILTRME RDGLVLRLKP VNDQRKLYVM LTEQGQTLYA RARSQVEEAY RKIEADFTPE
KTQQLMLLLD DLIALGRQHP DSEAEA
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