Gene SeD_A1083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1083 
Symbol 
ID6873662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1086310 
End bp1087293 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content47% 
IMG OID642784268 
Productgifsy-1 prophage PrpO 
Protein accessionYP_002214942 
Protein GI198244802 
COG category 
COG ID 
TIGRFAM ID[TIGR01610] phage replication protein O, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00906063 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.00000468495 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTATGT CAAATACCGC TGAAATATAC AAATTCCCTG CGCCGATACC GACGCAACAG 
GAGTGCCGTA TGGCTGATCT GGAAAATGGC TATTTACGTT TAGCTAATCA GATCCAGGAC 
GCCTTGTGTA TCGTTGAACT ATCGGGGCGT GAGTTCCGTG TTTTGAATGC GATTATCCGG 
CTGACTTATG GCTGGTCGAA AAAATCAGAT CGTATTGCCA ACAGCCTCAT TGCAGATAAG 
ACAACACTGA AGGTAAAGCA TGTATCCGAA GCGGTGCTGA GTCTTGCCTA TCGTAACATC 
ATTATCCTGC GCCGTATTGG TCAAACAAGA TACATAGGGA TTAATACAAA CCTGGATAAA 
TGGGCTTATT CCAAGCCACA TTGCTCAAAA TGTCCGGTGT CTTTTCCTGA TGATGAAATT 
GCCACATGGA TTATTTCTGT ACCCGAAACC AGGGATAGTT ATCCCCGAAA AGGGGGAAGG 
GCATCCCCGA AAACGGGGAT AGTTATCCCT GAAAACAGGG ATAGCGTTTT ACCCCATTCA 
GCCATCCCTG AAAACGGGGA TAGTTATCCC CGAAAAGAGG GAAGGGCATC CCCGAAAACA 
GGGAACACCA AAGACATTAT TCCAAAGACA AATATAAAAG ATCTAACCCC CTTTAATCCC 
CCTAAGGGAA AAGTGAAGTT TGATCCGTTG AGTATTCCTG TTCCCGAATG GCTGAATGCT 
GCGTCGTGGA ACGAATGGGT CACATACCGC CAGCAATCCG GAAAGCCCAT AAAAACCGAA 
CTGACGGTAA CAAAAGCTTT CAGGCTTCTG AAGGAGTGCC TGGATGAAGG CCACGATCCG 
GTAAACGTCA TCAACACAAG CATTGCCAAC GGCTACCAGG GACTATTCAA ACCGAAGTTC 
GCTCTCAACG ACCGAAGAGC TGGCAGAGAT GTGAACCACA TTTCTGCGCC AGACAAAACC 
ATTCCTACCG GATTCAGGGG GTAA
 
Protein sequence
MSMSNTAEIY KFPAPIPTQQ ECRMADLENG YLRLANQIQD ALCIVELSGR EFRVLNAIIR 
LTYGWSKKSD RIANSLIADK TTLKVKHVSE AVLSLAYRNI IILRRIGQTR YIGINTNLDK 
WAYSKPHCSK CPVSFPDDEI ATWIISVPET RDSYPRKGGR ASPKTGIVIP ENRDSVLPHS 
AIPENGDSYP RKEGRASPKT GNTKDIIPKT NIKDLTPFNP PKGKVKFDPL SIPVPEWLNA 
ASWNEWVTYR QQSGKPIKTE LTVTKAFRLL KECLDEGHDP VNVINTSIAN GYQGLFKPKF 
ALNDRRAGRD VNHISAPDKT IPTGFRG