| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1063 |
|---|
| Symbol | aspC |
|---|
| ID | 6875485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1068376 |
|---|
| End bp | 1069566 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642784248 |
|---|
| Product | aromatic amino acid aminotransferase |
|---|
| Protein accession | YP_002214922 |
|---|
| Protein GI | 198241979 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.000263956 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAGA ACATAACCGC CGCTCCTGCC GACCCGATTT TGGGCCTGGC CGATCTGTTT
CGCGCCGATG ACCGTCCAGG GAAAATTAAC CTTGGCATTG GCGTATATAA AGATGAAACC
GGCAAAACAC CGGTGCTCAC CAGCGTTAAA AAAGCCGAGC AGTATTTACT GGAAAATGAA
ACGACGAAAA ACTATCTCGG CATTGACGGG ATTCCGGAAT TTGCTCGCTG CACTCAGGAA
CTGCTGTTCG GCAAAGGCAG CGCGCTGATT AACGACAAGC GCGCACGCAC GGCGCAAACG
CCGGGCGGTA CCGGCGCGTT ACGCATTGCC GCCGACTTTT TGGCAAAAAA TACTCCGGTA
AAACGGGTGT GGGTGAGCAA CCCCAGCTGG CCGAACCACA AAAGCGTGTT TAACGCTGCC
GGCCTGGAAG TTCGGGAGTA CGCTTACTAC GATGCGGAAA ATCACACGCT GGATTTTGAA
GCGCTACAAG CCAGCCTGAG CGAAGCACAG GCCGGCGATG TGGTTCTGTT CCACGGTTGC
TGTCATAACC CAACCGGCAT TGACCCTACT CTGGAACAGT GGCAGGTTCT GGCTGAGCTT
TCCGTTGAAA AAGGGTGGCT GCCGCTATTC GATTTCGCTT ACCAGGGCTT TGCCCGCGGC
CTGGAAGAAG ATGCGGAAGG TCTGCGCGCC TTTGCCGCGC TGCATAAAGA GCTTATTGTC
GCCAGCTCCT ACTCCAAAAA CTTCGGCTTA TATAATGAGC GCGTCGGCGC CTGCACCCTC
GTGGCTGCCG ATGCGGAAAC CGTGGATCGC GCTTTTAGCC AGATGAAATC CGCCATTCGC
GCTAACTACT CCAACCCGCC AGCGCACGGC GCGTCCATCG TCGCGACTAT CCTGAGTAAT
GACGCCCTGC GCGCTATCTG GGAACAGGAA CTGACGGACA TGCGCCAGCG TATTCAGCGT
ATGCGTCAAC TGTTCGTGAA TACCTTGCAG GAAAAAGGCG CGAACCGTGA CTTCAGCTTT
ATTATCAAGC AGAACGGGAT GTTCTCATTC AGCGGTCTGA CCAAAGATCA GGTGCTACGT
CTGCGTGAAG AGTTTGGCGT TTATGCCGTG GCTTCTGGTC GCGTGAACGT GGCGGGCATG
ACCCCGGATA ATATGGCGCC GCTGTGCGAA GCCATTGTCG CGGTACTATA A
|
|---|
| Protein sequence | MFENITAAPA DPILGLADLF RADDRPGKIN LGIGVYKDET GKTPVLTSVK KAEQYLLENE
TTKNYLGIDG IPEFARCTQE LLFGKGSALI NDKRARTAQT PGGTGALRIA ADFLAKNTPV
KRVWVSNPSW PNHKSVFNAA GLEVREYAYY DAENHTLDFE ALQASLSEAQ AGDVVLFHGC
CHNPTGIDPT LEQWQVLAEL SVEKGWLPLF DFAYQGFARG LEEDAEGLRA FAALHKELIV
ASSYSKNFGL YNERVGACTL VAADAETVDR AFSQMKSAIR ANYSNPPAHG ASIVATILSN
DALRAIWEQE LTDMRQRIQR MRQLFVNTLQ EKGANRDFSF IIKQNGMFSF SGLTKDQVLR
LREEFGVYAV ASGRVNVAGM TPDNMAPLCE AIVAVL
|
|---|
| |