Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0595 |
Symbol | |
ID | 6872247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 609464 |
End bp | 612076 |
Gene Length | 2613 bp |
Protein Length | 870 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642783813 |
Product | outer membrane usher protein SfmD |
Protein accession | YP_002214500 |
Protein GI | 198245947 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.232455 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGA CAACCTGGTT TGCAGGGCGA TTTCCCGGCT ATGTATCACC GTTAAGCGGC GTGGCACTGT CGGTGCTGGC GGCGCTGTGT CCGCTGACGA GCCGCGGCGA AAGTTATTTC AACCCTGCGT TTTTGTCGGC GGATACCGCG TCCGTGGCGG ATTTATCTCG CTTTGAAAAA GGTAATCATC AGCCGCCTGG TATTTACCGG GTGGATATCT GGCGTAACGA CGAATTCGTA GCGACGCAGG ATATTCGTTT TGAGGCGGGC GCCGTGGGCG CCGGCGATAA ATCCGGCGGC CTGATGCCTT GTTTTACACC GGAGTGGATT AAACGGCTGG GCGTGAATAC CGCGGTGTTC CCTGTCTCAG ATAAAGGCGT CGATACCACG TGTATTCACC TTCCTGAGAA AATCCCGGGC GCGGAGGTCG CGTTCGATTT CGCGTCGATG CGCTTAAACA TTAGCTTGCC GCAGGCGTCA TTGCTCAACA GCGCGCGTGG CTATATCCCG CCGGAAGAGT GGGATGAAGG GATACCCGCC GCACTCATTA ATTACAGTTT TACCGGTAGC CGCGGAACAG ACAGCGATAG CTATTTTTTG AGTCTGCTGA GCGGGTTGAA CTATGGCCCC TGGCGGCTGC GTAATAACGG AGCCTGGAGC TATTCGAAAG GGGACGGCTA TCATTCGCAA CGCTGGAACA ACATTGGCAC CTGGGTACAG CGCGCCATCA TTCCGCTAAA AAGCGAACTG GTCATGGGGG ACAGCAATAC CGGGAACGAT GTTTTCGACA GCGTCGGCTT TCGCGGAGCG CGGCTGTACT CTTCTGACAA TATGTATCCC GATAGCCTGC AGGGCTACGC CCCCACGGTC AGAGGGATCG CCCGGACGGC GGCAAAGCTG ACGATACGAC AGAACGGGTA TGTTATCTAC CAAAGCTATG TGTCGCCGGG CGCGTTTGCG ATTACCGATC TTAATCCTAC CTCTTCCAGC GGCGACCTTG AGGTGACGGT AGATGAAAAA GACGGTAGCC AACAACGTTA CACGGTGCCT TACTCTACCG TTCCGCTATT GCAGCGTGAG GGTAGGGTGA AGTATGACCT GGTGGCCGGG GATTTTCGCA GCGGCAATAG TCAGCAGTCT TCGCCATTCT TTTTCCAGGG AACGGTGATT GCCGGCCTGC CTGCGGGGCT GACGGCTTAC GGCGGTACGC AACTTGCCGA TCGTTACCGT GCCGTGGTGG TCGGGGCGGG GCGAAATTTG GGCGACTGGG GAGCCGTGTC GGTCGATGTC ACACATGCGC GTAGCCAACT GGCAGATGAC AGCACCCATC AGGGGCAATC GTTGCGTTTT CTGTACGCCA AATCGCTGAA TAATTACGGG ACTAATTTTC AATTGCTGGG TTACCGCTAT TCCACGCGCG GATTTTACAC CCTGGATGAT GTGGCATACC GCAGTATGGA AGGGTACGAC TACGAATACG ATAGCGACGG ACGCCGCCAT AAAGTGCCGG TGGCGCAGAG CTACCACAAT CTCCGCTACA GCAAAAAAGG CCGCTTTCAG GTCAATATTT CGCAAAACCT GGGGGATTAC GGGTCACTGT ATCTTTCCGG CAGTCAACAA AATTACTGGA ATACGGCGGA TACCAATACC TGGTATCAAC TGGGATACGC CAGTGGATGG CAAGGCATAA GTTATTCGCT GTCATGGTCG TGGAACGAGT CGGTGGGGAT CTCAGGCGCC GATCGCATTC TGGCATTCAA TATGTCCGTT CCGTTTAGCG TTCTGACCGG ACGGCGCTAT GCGCGCGACA CTATTCTTGA TCGTACTTAT GCCACGTTTA ACGCCAACCG CAACCGCGAC GGCGACAATA GCTGGCAGAC CGGCGTGGGC GGCACGCTTC TGGAAGGACG TAATCTGAGC TACAGCGTGA CGCAAGGGCG TAGCAGTAGC AATGGTTATA GCGGCAGCGC CAGCGCTAGC TGGCAGGCGA CGTATGGCAC GCTGGGCGTG GGATATAACT ACGATCGCGA TCAGCATGAC TATAACTGGC AACTTTCCGG CGGCGTGGTC GGTCATGCGG ATGGTATTAC GTTTAGCCAA CCGTTGGGCG ATACCAATGT CTTGATTAAA GCGCCGGGAG CGAAAGGCGT GCGCATCGAA AACCAGACCG GCGTGAAAAC GGACTGGCGG GGTTATGCGG TAATGCCCTA CGCCACGGTA TATCGCTATA ACCGCGTCGC GTTAGATACC AACACGATGG ACAACCATAC CGATGTCGAA AATAACGTCA GCAGCGTAGT GCCGACAGAG GGCGCTCTGG TGCGGGCCGC TTTTGATACG CGGATAGGCG TAAGGGCAAT CATTACCGCG AGGCTTGGCG GACGTCCGTT ACCGTTTGGC GCGATAGTAC GAGAAACCGC CAGCGGTATT ACCAGTATGG TCGGCGATGA CGGGCAAATT TATCTGAGCG GCTTGCCGCT AAAAGGTGAA CTGTTCATCC AGTGGGGAGA GGGGAAAAAC GCGCGTTGTA TCGCCCCTTA CGCCCTGGCG GAGGATAGCC TGAAGCAGGC GATTACGATA GCCAGCGCGA CCTGTATCCG TCCGTCGTCA TAA
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Protein sequence | MKKTTWFAGR FPGYVSPLSG VALSVLAALC PLTSRGESYF NPAFLSADTA SVADLSRFEK GNHQPPGIYR VDIWRNDEFV ATQDIRFEAG AVGAGDKSGG LMPCFTPEWI KRLGVNTAVF PVSDKGVDTT CIHLPEKIPG AEVAFDFASM RLNISLPQAS LLNSARGYIP PEEWDEGIPA ALINYSFTGS RGTDSDSYFL SLLSGLNYGP WRLRNNGAWS YSKGDGYHSQ RWNNIGTWVQ RAIIPLKSEL VMGDSNTGND VFDSVGFRGA RLYSSDNMYP DSLQGYAPTV RGIARTAAKL TIRQNGYVIY QSYVSPGAFA ITDLNPTSSS GDLEVTVDEK DGSQQRYTVP YSTVPLLQRE GRVKYDLVAG DFRSGNSQQS SPFFFQGTVI AGLPAGLTAY GGTQLADRYR AVVVGAGRNL GDWGAVSVDV THARSQLADD STHQGQSLRF LYAKSLNNYG TNFQLLGYRY STRGFYTLDD VAYRSMEGYD YEYDSDGRRH KVPVAQSYHN LRYSKKGRFQ VNISQNLGDY GSLYLSGSQQ NYWNTADTNT WYQLGYASGW QGISYSLSWS WNESVGISGA DRILAFNMSV PFSVLTGRRY ARDTILDRTY ATFNANRNRD GDNSWQTGVG GTLLEGRNLS YSVTQGRSSS NGYSGSASAS WQATYGTLGV GYNYDRDQHD YNWQLSGGVV GHADGITFSQ PLGDTNVLIK APGAKGVRIE NQTGVKTDWR GYAVMPYATV YRYNRVALDT NTMDNHTDVE NNVSSVVPTE GALVRAAFDT RIGVRAIITA RLGGRPLPFG AIVRETASGI TSMVGDDGQI YLSGLPLKGE LFIQWGEGKN ARCIAPYALA EDSLKQAITI ASATCIRPSS
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