Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0297 |
Symbol | |
ID | 6874008 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 315289 |
End bp | 316797 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642783540 |
Product | SciI protein |
Protein accession | YP_002214228 |
Protein GI | 198243093 |
COG category | [S] Function unknown |
COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.770201 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAACA GTAATATGCA GGCAACCGAC GCGGTTGCTC AGGATACCGC CTCCGCATCC GGTGAATTTG ATGCGTTGCT GAATCAGGCC TTCCGACCCA AGACTACCCA GGCGGCAAAA GCCGTGGAAG CCGCGGTGCA GACGCTGGCG CAACAGGCGC TGGCGAACAC GATCACCGTC AGCGATGACG CCTATAAAAG CATCAGCGCT ATTATTGCGC AGATCGACTT TAAACTGACC GAACAGATCA AACTGATCCT GCAACATCCC GACTGGCAGA AGCTGGAATC CTCGTGGCGC GGTATGGAGC ATCTGGTTTA CAACACCGAG ACCGACGAAA AGCTGAAAAT TCGCTTCATG AATCTGTCAA AAGATGAATT GCGGCGCAAC ATGAAGCGTT ACAAGGGCAT CGCCTGGGAT CAAAGCCCGA TGTTCAAGAA ACTGTATGAA GCCGAATACG GCCAGTTAGG TGGCGAACCT TATGGCTGTA TCATTGCGGA TTACTACTTC GACCATACAC CGCCCGATGT GGATCTGCTT GGCTCTATCG CCAAAGTCGC CGCGTCGGCC CATGCGCCGT TTATTGCCGG GGCTTCCCCC TCGGTACTGC AAATGGACTC CTGGCAGGAA CTGGCGAATC CCCGCGACCT GACCAAAATC GTCACCCAGA ACCTGGAATA TGCGCCGTGG AACTCGCTGC GGGCTAGCGA AGACTCCCGT TATATTGGCC TGACGATGCC GCGTTTTCTT GCCCGCCTGC CGTATGGCGC AAAAACCAAC CCGGTGGACG AGTTTGATTT TGAAGAAGAT GCGGATGGTT CTGACCATAC CAAATACGTC TGGAGCAACG CGGCCTACGC GATGGGCGTA AACATCAACC GTTCCTTCAA ACACTACGGC TGGTGTACGT TGATTCGCGG TGTGGAATCA GGCGGTGCGG TGGAAAATCT TCCCTGCCAT ACCTTCCCGA CTGACGATGG CGGCGTGGAC ATGAAATGCC CGACCGAAAT CGCCATCTCT GACCGCCGCG AGGCTGAACT GGCGAAAAAC GGTTTTATCC CGTTGATCCA CCGTAAAAAC TCAGACTATG CCGCCTTTAT CGGCGCACAA TCGCTGCAAA AACCACAGGA ATACTACGAT CCGGACGCGA CGGCCAACGC CAACCTGTCC GCCCGTCTGC CGTACCTGTT CGCCTGCTCG CGCTTCGCTC ACTTCCTCAA ATGTATCGTC CGCGACAAAA TCGGTTCCTT TAAAGAGCGT GAGGATATGC AGCGCTGGCT AAATGAATGG ATTATGAATT ACGTCGACGC CGATCCGGTG AACTCCTCGC AAGAAACTAA AGCCCGTCGT CCGCTGGCTG CCGCTGAAGT AGTGGTGGAA GAGGTGGAAG GCAATCCAGG TTATTACGAC GCGAAATTCT TCCTGCGTCC GCATTTCCAG CTTGAAGGGC TGACGGGATC GCTGCGCCTG GTGACAAAAC TGCCGTCAGT GAAGCAGGGC AATGCCTGA
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Protein sequence | MANSNMQATD AVAQDTASAS GEFDALLNQA FRPKTTQAAK AVEAAVQTLA QQALANTITV SDDAYKSISA IIAQIDFKLT EQIKLILQHP DWQKLESSWR GMEHLVYNTE TDEKLKIRFM NLSKDELRRN MKRYKGIAWD QSPMFKKLYE AEYGQLGGEP YGCIIADYYF DHTPPDVDLL GSIAKVAASA HAPFIAGASP SVLQMDSWQE LANPRDLTKI VTQNLEYAPW NSLRASEDSR YIGLTMPRFL ARLPYGAKTN PVDEFDFEED ADGSDHTKYV WSNAAYAMGV NINRSFKHYG WCTLIRGVES GGAVENLPCH TFPTDDGGVD MKCPTEIAIS DRREAELAKN GFIPLIHRKN SDYAAFIGAQ SLQKPQEYYD PDATANANLS ARLPYLFACS RFAHFLKCIV RDKIGSFKER EDMQRWLNEW IMNYVDADPV NSSQETKARR PLAAAEVVVE EVEGNPGYYD AKFFLRPHFQ LEGLTGSLRL VTKLPSVKQG NA
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