Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0293 |
Symbol | |
ID | 6871117 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 309903 |
End bp | 310727 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642783536 |
Product | SciE protein |
Protein accession | YP_002214224 |
Protein GI | 198242047 |
COG category | [R] General function prediction only |
COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 0.816472 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA CTGACACGCT TCCTGCTACC CTGTCCGCGC TGCTACAGGA ATACTCTATT GCGGAGGGGA TTCAGATGGC GGAGCAGCAG GTTCGGGAAA ATCCGGCGAA GGCGCTCTGC CGCCACAGCC TGTTTCAGTT GCTGTGTGTG GCCGGAGACT GGTCGCGGGC GCTACACCAG CTTCAGCTAT GTGCCAGGAT GGAGGCCAAT TATACCCAGG AGGCCCGGCT GTACCGGGAG CTGGTTCGCT GCGAAATGTT CCGCCACACC GTTTTTCAGG GTGAACAACG ACCCGGTTTT CTTCTGCCGC AGCCCGTTTG GGTGGAGTCA CTGCTGGCGG CACTCGCCTG TCATGACGAT ACCGGTGAGG TTGATAAACA CCGTAATACC GCACTGGAAG CCATAACAGA CACGGGCGGG CAGTGGAACG GCGGCGCATT TGACTGGGCG AGCGACAGCG ATTCCCGCCT TGGCCCGGTA CTTGAGCTAG TCACCGGCGG CGTGTATATC TGGCTGCCGT TTTCGCAAAT ACGCTCGCTG GAATCGCCGC AACCGACGCG CCTGACCGAT CTGCTGTGGA AACCCGTTAA TATCACCCTG GTGAATGGCG ATACGCACGG CGCCTGGCTC TTTACCCGTT ACAGCGGTTC GGAAAGTGCA TCCGACGCCC TGCGTCTGTG CCGGGAAACC GCCTGGCAGG ACGGCCCCGG CGAAACCACC GTGCGAGCGC TGGGGCAGAA AGTGTGGCTG ACCAGCCACG GCGATATCAG CCTGCTGGAC ATGGCCCATT GTACCTTTCA TGCTCAGGAA AACGATGGCG CATGA
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Protein sequence | MKKTDTLPAT LSALLQEYSI AEGIQMAEQQ VRENPAKALC RHSLFQLLCV AGDWSRALHQ LQLCARMEAN YTQEARLYRE LVRCEMFRHT VFQGEQRPGF LLPQPVWVES LLAALACHDD TGEVDKHRNT ALEAITDTGG QWNGGAFDWA SDSDSRLGPV LELVTGGVYI WLPFSQIRSL ESPQPTRLTD LLWKPVNITL VNGDTHGAWL FTRYSGSESA SDALRLCRET AWQDGPGETT VRALGQKVWL TSHGDISLLD MAHCTFHAQE NDGA
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