Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0234 |
Symbol | dapD |
ID | 6874500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 250127 |
End bp | 250951 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642783480 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_002214174 |
Protein GI | 198244458 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.214416 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 75 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAGT TACAGAACGT TATTGAGACC GCTTTTGAGC GCCGCGCCGA TATTACGCCG GCTAATGTAG ATACCGTGAC CCGAGAGGCA GTAAACCAGG TCATTTCTCT ACTTGATTCC GGCGCGCTGC GTGTCGCAGA AAAAATCGAC GGTCAGTGGG TCACTCACCA GTGGTTGAAG AAAGCGGTTC TGCTCTCTTT CCGTATTAAC GATAACCAGG TTATCGACGG TGCGGAAAGC CGCTACTTCG ATAAAGTCCC GATGAAATTC GCTGATTACG ACGAAGCGCG TTTTCAGAAA GAAGGCTTCC GCGTCGTTCC GCCTGCGGCC GTTCGTCAGG GCGCATTTAT CGCCCGCAAC ACCGTGCTGA TGCCGTCTTA CGTTAACATC GGCGCCTACG TTGACGAAGG CACCATGGTT GACACCTGGG CGACGGTGGG TTCCTGCGCG CAGATTGGTA AAAATGTTCA CCTTTCCGGC GGCGTGGGTA TCGGCGGCGT ACTGGAGCCG CTGCAGGCTA ACCCGACCAT CATTGAAGAC AACTGCTTTA TTGGCGCGCG TTCTGAAGTC GTGGAAGGCG TCATTGTCGA AGAAGGTTCC GTCATTTCCA TGGGCGTATA CCTCGGCCAG AGCACCAAAA TCTACGATCG CGAAACCGGT GAAGTTCACT ATGGCCGCGT ACCGGCGGGC TCCGTGGTCG TTTCCGGCAA CCTGCCGTCA AAAGACGGTA AGTACAGTTT GTATTGCGCG GTGATCGTGA AAAAAGTCGA CGCCAAAACG CGTGGTAAAG TGGGCATTAA CGAATTATTG CGCACTATTG ATTAA
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Protein sequence | MQQLQNVIET AFERRADITP ANVDTVTREA VNQVISLLDS GALRVAEKID GQWVTHQWLK KAVLLSFRIN DNQVIDGAES RYFDKVPMKF ADYDEARFQK EGFRVVPPAA VRQGAFIARN TVLMPSYVNI GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED NCFIGARSEV VEGVIVEEGS VISMGVYLGQ STKIYDRETG EVHYGRVPAG SVVVSGNLPS KDGKYSLYCA VIVKKVDAKT RGKVGINELL RTID
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