Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0205 |
Symbol | hrpB |
ID | 6874789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 215961 |
End bp | 218435 |
Gene Length | 2475 bp |
Protein Length | 824 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642783452 |
Product | ATP-dependent RNA helicase HrpB |
Protein accession | YP_002214146 |
Protein GI | 198243727 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.879127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 83 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACAAT GCGGCGCAAA GAAAGTTAAC CCCGTGGAGC CGTTTGTGAC GTCATTGCCC GTTGCCGCCG TATTGCCTGA ATTGTTGACA GCCCTAAAAA CCGCGCCGCA GGTTTTGTTG TCCGCGCCTA CCGGGGCGGG GAAATCCACC TGGCTGCCGT TGCAACTCCT GCAACAGGGG CCAGTTGCTG GAAAAATTCT CCTGCTTGAA CCGCGTCGTC TGGCGGCGCG TAATGTCGCG CAGCGTCTGG CGGAAGCGTT GAATGAAAAG CCTGGCGAAA CGGTAGGTTA CCGGATGCGC GCGCAAAGCT GCGTGGGGCC GCGTACCCGG CTGGAAGTGG TGACAGAAGG CGTATTGACC AGAATGATTC AGCGCGATCC CGAATTACGC GGCGTGGGGC TGGTGATACT GGATGAATTT CATGAGCGCA GTTTACAGGC GGATTTAGCG TTGGCGCTGT TGCTGGATAT CCAGCAAGGG CTCCGTGACG ATCTCAGGCT GTTAATCATG TCTGCGACGC TGGATAACGA CAGGCTTTGT CAGCGACTGC CTGATGCGCC GACGATCGTC TCGGAGGGGC GCGCGTTCCC GGTGGAGCGA CGTTATCAGC CGCTCGCGAC GCATTTGCGT TTTGATGAAG CCGTCGCGAT GGCGACAGCG GAACTGTTGC GCAATGAAAA CGGTTCGCTG CTGCTATTTT TACCCGGCGT AGGTGAAATA CAGCGCGTTC ATGAACATCT GGCGTCGCGG GTAGGGAGCG ATGTCCTGCT TTGTCCGCTG TATGGCGCAT TGTCTTTGGA GGCGCAACGC AAAGCGATTG TTCCCGCCCC CGTCGGGATG CGTAAAGTGG TGTTGGCGAC TAACATTGCC GAAACCAGTT TGACGATTGA AGGGATTCGT CTGGTCGTCG ATAGCGCTCA GGAGCGCGTG GCGCGATTCG ACGCGCGAAC GGGACTGACG CGGCTGGTTA CGCAGCGTAT CAGTCAGGCG TCAATGACGC AGCGCGCGGG GCGCGCCGGA CGACTGGCGC CGGGGATCTG TTTACATCTG CTGGCCAAAG AACAGGCGGA GCGGGCGGCG GCGCAAAGCG ATCCGGAAAT CTTACACAGC GACCTTTCCG GTTTATTGAT GGAGGTGTTG CAGTGGGGAT GTCACGATCC GGCATCGCTT TTCTGGCTGG ACAGGCCGCC GGAGGTGAAT CTTCAGGCCG CCCGCCGTTT ATTATTGATG TTAGGCGCGC TGGAGGGCGA GCGGTTAAGC GCGCGGGGCC GGAAAATGGC GGCAATGGGT AACGATCCGC GCCTGGCGGC GATGTTAGTC AACGCCGACG AGGGCGATAG CGCCGCCACC GCCGCCATGC TCGCGGCCAT CCTTGAGGAC CCGCCGCGCG GCGGCGGTAC GGATTTAAGC GTGCTATTTT CGCGGCGACA GCCGGGCTGG CAGCAGCGTA GCCAGCAGCT TTTAAAACGG CTGCAGGTGC GTAATGGCGA GCCGGATAGC GCGCTTATTA TGCCGCTGTT GGCCAGAGCG TTTAGCGACC GCATCGCGCG GCGTCGTGGT CAGGAAGGGC GCTATCAGTT AGCCAATGGT ATGGGCGCGA TGTTAGATGC GGATGACGCG TTGGGACGTC ATGAATGGCT GATCGCGCCG CTGTTACTGC AAGGTAGCGC CTCGCCGGAC GCCCGAATAT TGTTGGCGCA GCCGCTGGAT ATTGCCTCGC TTATTCAGGC GTGTCCTGAT TTACTGCGCC AGTCCGACAC GGTTGAATGG GACGAGGCGC AGGGAACGTT GAAAGCATGG CGCAGAATGC GTATTGGACA GTTGACGGTT AGCGTTCAGC CACTGGCGAA GCCGTCTGAA GAGGAGCTTC ATCAGGCGAT GCTGAACGGC ATCCGCGATA AAGGTCTGTC CGTCCTTAAC TGGACGCCGG AAGCGGAGCA GTTCCGTCTG CGTCTGCACT GTGCGGCGAA ATGGCTGCCG GAATATGACT GGCCTGCCGT GGATGAGGCG TCGCTGCTGG CGACTCTGGA AAACTGGTTG CTGCCGCACA TGACAGGCGT ACAGTCGTTA CGAGGGCTAA AATCCCTGAA CGTTAATCAG GCGTTACGGG GACTGCTTGA CTATGCCATG CTGCAACGTC TGGATAGTGA ACTGCCTGGG CATTACACTG TGCCGACGGG AAGCCGAATA ACGATTCGTT ATCATGAAGA TAACCCGCCC GCGCTGGCGG TCAGAATGCA GGAAATGTTT GGCGAAGCGA AGACCCCAAC CATCGCTCAG GGCCGCGTGC CGCTGGTGCT GGAACTGCTT TCGCCAGCGC AGCGACCGCT ACAGATTACG CGCGATTTAA GCGCTTTCTG GCAGGGGGCG TATCGCGAAG TGCAAAAAGA GATGAAAGGC CGTTATCCCA AACATGTCTG GCCGGACGAT CCGGCGAATA CGGCCCCAAC GCGGCGCACG AAGAAGTATT CGTGA
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Protein sequence | MLQCGAKKVN PVEPFVTSLP VAAVLPELLT ALKTAPQVLL SAPTGAGKST WLPLQLLQQG PVAGKILLLE PRRLAARNVA QRLAEALNEK PGETVGYRMR AQSCVGPRTR LEVVTEGVLT RMIQRDPELR GVGLVILDEF HERSLQADLA LALLLDIQQG LRDDLRLLIM SATLDNDRLC QRLPDAPTIV SEGRAFPVER RYQPLATHLR FDEAVAMATA ELLRNENGSL LLFLPGVGEI QRVHEHLASR VGSDVLLCPL YGALSLEAQR KAIVPAPVGM RKVVLATNIA ETSLTIEGIR LVVDSAQERV ARFDARTGLT RLVTQRISQA SMTQRAGRAG RLAPGICLHL LAKEQAERAA AQSDPEILHS DLSGLLMEVL QWGCHDPASL FWLDRPPEVN LQAARRLLLM LGALEGERLS ARGRKMAAMG NDPRLAAMLV NADEGDSAAT AAMLAAILED PPRGGGTDLS VLFSRRQPGW QQRSQQLLKR LQVRNGEPDS ALIMPLLARA FSDRIARRRG QEGRYQLANG MGAMLDADDA LGRHEWLIAP LLLQGSASPD ARILLAQPLD IASLIQACPD LLRQSDTVEW DEAQGTLKAW RRMRIGQLTV SVQPLAKPSE EELHQAMLNG IRDKGLSVLN WTPEAEQFRL RLHCAAKWLP EYDWPAVDEA SLLATLENWL LPHMTGVQSL RGLKSLNVNQ ALRGLLDYAM LQRLDSELPG HYTVPTGSRI TIRYHEDNPP ALAVRMQEMF GEAKTPTIAQ GRVPLVLELL SPAQRPLQIT RDLSAFWQGA YREVQKEMKG RYPKHVWPDD PANTAPTRRT KKYS
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