| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0189 |
|---|
| Symbol | |
|---|
| ID | 6871331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 201644 |
|---|
| End bp | 202723 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642783436 |
|---|
| Product | putative fimbrial protein precurosr |
|---|
| Protein accession | YP_002214130 |
|---|
| Protein GI | 198243284 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.558575 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATT TATGGATGCT GCTGGCGCTG TCGCTATTTT CAGGCCATGC GCTGGCAGAC
GGAACGATGG GCAACGGAAG CGGCTGGTGT CAACCCACCA GCGGCACGCA TAATTTCTTT
TTTCCCCTTG ACCAGACCAT TACCGATACG GATGAGAACC AGGCAGGGAA AATAGTCAAA
GAGAGTTGGT CGGTCGGCGG CGAATACAGC GCCAGGTGCG ACTGCGATAA TAAAGATTAT
CAGGGCGTTA ACTATTTCAC CGCCACGACC GGCGATTTAA CACAAAAAGG AACGTACAGC
GAAGCGGGTA GCAATGGGCA ACAGATGGAT TTTTATGTTC TGGTCGCGGG TAAGCTGGAG
ATTGGTACGG AAACCTACAT CGTCGGTAAC CTGAAACAGT ATATCCCCGT TCCCTTTTCA
GCGATCAGTA ATCAGGCCCC CACCGCAGGC GGGTGTACGG GCGCGGACAT AAACAAAATG
TCCGCAGGGA ATAAGGGTAA CGTGCGTATT TATATTACTC ACCCACTGGT AGGTGAAATC
ACCATTCCTG AGACGACGAT TATGAATCTC TATTTGTCAA AAACGCCGGG CAGCAGCGGA
GATAATATTC CCCCTTCCGT TCCACCGATG GCGCACGTCA CCATGTCCGG GACCATTACC
GTGCCGCAGT CCTGCTCCAT CAACGCCGGG CAGGTTATCG AGGTCAGGCT ACCGGATATT
GAGGGCAAAG ATATTCGTCA CCTCGGCGAC AGTCCGCAGA ACTCGCACGT CACCACTCAG
GTAAACTTTA CCTGTAGTAA CGTGGCGGAC GGCACCAACC TGTCGATGTC ATTAAATGGC
GCAACCGATC CGCACAACCC GGACTACCTG AAAACTGACA ATGAGAATTT GGGGATACGG
ATTTCCGATA AATACGATAA TACCATCGTT CCCGGCGGCA GCGCCGAATT GCCGATTGAA
GATTACGCCG ACGGTAAAGG CAGCACCGAG TTCACCGCCG CGCCGGTCAA TACCACCGGA
CATGTTCCCC ACACCGGAGA ATACCAGGCT ACCGCCACGC TGGAGATTCA GATTCGCTGA
|
|---|
| Protein sequence | MKNLWMLLAL SLFSGHALAD GTMGNGSGWC QPTSGTHNFF FPLDQTITDT DENQAGKIVK
ESWSVGGEYS ARCDCDNKDY QGVNYFTATT GDLTQKGTYS EAGSNGQQMD FYVLVAGKLE
IGTETYIVGN LKQYIPVPFS AISNQAPTAG GCTGADINKM SAGNKGNVRI YITHPLVGEI
TIPETTIMNL YLSKTPGSSG DNIPPSVPPM AHVTMSGTIT VPQSCSINAG QVIEVRLPDI
EGKDIRHLGD SPQNSHVTTQ VNFTCSNVAD GTNLSMSLNG ATDPHNPDYL KTDNENLGIR
ISDKYDNTIV PGGSAELPIE DYADGKGSTE FTAAPVNTTG HVPHTGEYQA TATLEIQIR
|
|---|
| |