| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0026 |
|---|
| Symbol | |
|---|
| ID | 6875652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 29474 |
|---|
| End bp | 29980 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642783286 |
|---|
| Product | fimbrial subunit |
|---|
| Protein accession | YP_002213980 |
|---|
| Protein GI | 198245849 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0429819 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.158284 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTGTC CGCAAATCAA TGCCAGCGCT GACGACCTCG CTTATAACCT CGAATTTACC
GGCACTATTG TGGCGCAAAC CTGCGACATA GATATTTCCA GTCTCAGTCA AAGTATTGAT
TTAGGACAGT TTGCGGTTGG CGACTTTCCT TCGACAGGAA CAACGACAAA ATTTAAGCCC
TTTAATATCA ACCTCAAAAA TTGTTCCCGA GGAATTGCCG GGGCGAAGAT CTGGTTTACC
GGCGAACCCG ATCCGGACAA TCCCGCGCTA CTGGCGATAA CCGACACCGG GATGGGAAGC
GGAAACATGT TAGCAAGCGG GGTTGGGGTG GAAATTCTGA ATGATGATCA GGATACCATC
AGTATCAATA ATGCCGACTC GGTGGTCTAT CCGTTGAAAG CCGGACGCAA CACGCTGTCT
TTTTATATTC GCTATAAATC GACCCGGCCG ACGGTCACGT CCGGGAACGC GACGGCGGTC
ATGTATTTCG ATATGCAGTA TGAATGA
|
|---|
| Protein sequence | MLCPQINASA DDLAYNLEFT GTIVAQTCDI DISSLSQSID LGQFAVGDFP STGTTTKFKP
FNINLKNCSR GIAGAKIWFT GEPDPDNPAL LAITDTGMGS GNMLASGVGV EILNDDQDTI
SINNADSVVY PLKAGRNTLS FYIRYKSTRP TVTSGNATAV MYFDMQYE
|
|---|
| |