| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B3510 |
|---|
| Symbol | rpoN |
|---|
| ID | 6795555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 3401621 |
|---|
| End bp | 3403054 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642777643 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_002148245 |
|---|
| Protein GI | 197251381 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAG GTTTGCAACT CAGGCTTAGC CAACAACTGG CGATGACGCC TCAGCTACAA
CAGGCCATCC GTCTGTTGCA GTTGTCTACG CTGGAACTTC AGCAGGAACT CCAGCAAGCG
CTGGAAAATA ACCCGCTGCT TGAGCAAACC GATCTTCATG ACGAAATCGA CACTCAGCAA
CCTCAGGATA ACGATCCTCT CGATACCGCC GACGCGCTCG AACAAAAAGA GATGCCGGAA
GAGCTGCCGC TTGACGCCAG TTGGGATGAA ATTTACACCG CCGGGACGCC GTCCGGCCCC
AGCGGCGATT ATATCGACGA TGAGCTGCCC GTCTATCAGG GCGAAACGAC GCAGTCGTTG
CAGGATTATC TGATGTGGCA GGTTGAGCTA ACGCCCTTCT CGGACACCGA TCGCGCTATT
GCGACATCCA TTGTCGACGC GGTAGATGAT ACCGGTTATC TCACCGTATC CCTGGACGAA
ATTCGCGAAA GTATGGGCGA TGTAGAGGTG GATCTCGATG AGGTTGAAGC CGTTCTGAAG
CGCATTCAGC GTTTTGATCC GGTAGGCGTC GCGGCAAAAG ATCTTCGCGA CTGTCTGCTG
ATCCAGCTTT CACAATTCGA CAAATCCACG CCGTGGCTGG AAGAGGCGCG GCTTATTATC
TGCGATCATC TTGATCTGCT GGCCAACCAC GATTTCCGCA CGTTGATGCG CGTTACCCGA
CTGAAAGAAG AGGTGCTGAA AGAGGCGGTA AACCTGATTC AGTCGCTCGA TCCCAGACCC
GGTCAATCGA TCCAGACCGG CGAGCCGGAG TACGTTATCC CGGATGTGCT GGTACGCAAG
CATAACGGTC GCTGGACGGT GGAGCTTAAT AGCGACAGTA TTCCCCGTTT ACAGATTAAC
CAGCACTATG CCGCCATGTG CAATAGCGCG CGCAACGATG CCGACAGCCA GTTCATCCGC
AGTAATTTAC AGGATGCGAA GTGGCTGATA AAAAGCCTTG AAAGCCGCAA CGACACGCTG
CTGCGCGTCA GTCGCTGCAT CGTCGAGCAA CAGCAAGCCT TTTTTGAACA GGGCGAAGAA
TATATGAAAC CGATGGTACT GGCGGATATC GCCCAGGCCG TCGAGATGCA CGAATCCACT
ATATCCCGCG TGACCACGCA GAAGTATTTG CACAGCCCGC GCGGTATTTT TGAACTCAAA
TATTTCTTTT CCAGCCACGT CAATACCGAA GGCGGAGGCG AAGCCTCTTC CACCGCGATT
CGCGCGCTGG TGAAGAAGTT AATTGCGGCG GAAAACCCCG CGAAACCACT GAGCGACAGC
AAGTTAACCT CTCTGCTGTC AGAACAAGGT ATCATGGTGG CGCGCCGCAC TGTTGCGAAG
TACCGAGAGT CTTTATCCAT TCCGCCGTCA AACCAACGCA AACAGCTGGT TTGA
|
|---|
| Protein sequence | MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQELQQA LENNPLLEQT DLHDEIDTQQ
PQDNDPLDTA DALEQKEMPE ELPLDASWDE IYTAGTPSGP SGDYIDDELP VYQGETTQSL
QDYLMWQVEL TPFSDTDRAI ATSIVDAVDD TGYLTVSLDE IRESMGDVEV DLDEVEAVLK
RIQRFDPVGV AAKDLRDCLL IQLSQFDKST PWLEEARLII CDHLDLLANH DFRTLMRVTR
LKEEVLKEAV NLIQSLDPRP GQSIQTGEPE YVIPDVLVRK HNGRWTVELN SDSIPRLQIN
QHYAAMCNSA RNDADSQFIR SNLQDAKWLI KSLESRNDTL LRVSRCIVEQ QQAFFEQGEE
YMKPMVLADI AQAVEMHEST ISRVTTQKYL HSPRGIFELK YFFSSHVNTE GGGEASSTAI
RALVKKLIAA ENPAKPLSDS KLTSLLSEQG IMVARRTVAK YRESLSIPPS NQRKQLV
|
|---|
| |