| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B2552 |
|---|
| Symbol | nupC |
|---|
| ID | 6794885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 2486555 |
|---|
| End bp | 2487757 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642776744 |
|---|
| Product | nucleoside transporter NupC |
|---|
| Protein accession | YP_002147367 |
|---|
| Protein GI | 197251216 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00708575 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCG TCCTTCATTT TGTCCTGGCG CTTGCCGTTG TTGCGGTACT CGCACTGCTG
GTTAGCAGTG ACCGTAAAAA AATTCGCATT CGTTATGTCA TTCAGTTACT TGTTATCGAA
GTGCTACTGG CCTGGTTCTT CCTGAACTCT GATGTTGGCC TTGGCTTCGT AAAAGGTTTC
TCCGAGATGT TTGAAAAACT GCTCGGATTT GCCAACGAAG GGACAAACTT CGTCTTCGGC
AGTATGAACG ATCAAGGTTT GGCGTTCTTC TTCCTGAAAG TATTGTGCCC GATCGTCTTT
ATTTCCGCGT TGATCGGTAT TCTCCAGCAT ATCCGTGTTC TGCCAGTGGT CATCCGCGCT
ATTGGTTTCC TGCTGTCCAA AGTAAACGGT ATGGGCAAAC TGGAATCTTT TAACGCCGTC
AGCTCGCTGA TCCTCGGTCA GTCTGAGAAC TTTATCGCTT ATAAAGATAT CCTCGGCAAA
ATGTCCCGTA ACCGCATGTA CACCATGGCT GCAACGGCGA TGTCGACCGT TTCCATGTCT
ATTGTGGGCG CGTATATGAC CATGCTGGAC CCTAAATATG TGGTCGCAGC GCTGGTTCTG
AATATGTTCA GCACCTTTAT CGTTCTGTCG CTGATCAACC CCTATGTCGT TGATGCCAGC
GAAGAAAATA TTCAGATGTC GAACCTGCAT GAAGGCCAAA GTTTCTTCGA AATGCTGGGC
GAGTACATTC TGGCAGGTTT TAAAGTGGCG ATTATCGTCG CGGCGATGCT GATCGGCTTC
ATCGCGCTGA TCGCGGCGCT GAACGCGCTG TTCGCAACGG TTACCGGTTG GTTCGGCTAC
AGCATCTCCT TCCAGGGCAT TCTGGGTTAC ATCTTCTACC CGGTCGCATG GGTAATGGGT
GTACCGTCCA GTGAAGCGCT GCAGGTAGGA AGTATCATGG CGACCAAACT GGTTTCCAAC
GAATTCGTGG CGATGATGGA TCTGCAGAAA ATCGCCTCTA CCCTCTCTCC ACGCGCTGAA
GGCATTATCT CCGTCTTCCT GGTGTCCTTC GCGAACTTCT CTTCCATCGG TATTATTGCG
GGCGCGATTA AAGGCCTGAA CGAAGAGCAA GGCAACGTGG TTTCCCGTTT TGGTCTGAAA
CTGGTTTACG GTTCTACGCT GGTGAGCGTA CTGTCCGCCT CTATCGCGGC GCTGGTACTG
TAA
|
|---|
| Protein sequence | MDRVLHFVLA LAVVAVLALL VSSDRKKIRI RYVIQLLVIE VLLAWFFLNS DVGLGFVKGF
SEMFEKLLGF ANEGTNFVFG SMNDQGLAFF FLKVLCPIVF ISALIGILQH IRVLPVVIRA
IGFLLSKVNG MGKLESFNAV SSLILGQSEN FIAYKDILGK MSRNRMYTMA ATAMSTVSMS
IVGAYMTMLD PKYVVAALVL NMFSTFIVLS LINPYVVDAS EENIQMSNLH EGQSFFEMLG
EYILAGFKVA IIVAAMLIGF IALIAALNAL FATVTGWFGY SISFQGILGY IFYPVAWVMG
VPSSEALQVG SIMATKLVSN EFVAMMDLQK IASTLSPRAE GIISVFLVSF ANFSSIGIIA
GAIKGLNEEQ GNVVSRFGLK LVYGSTLVSV LSASIAALVL
|
|---|
| |