| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeAg_B2251 |
|---|
| Symbol | |
|---|
| ID | 6796424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Agona str. SL483 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011149 |
|---|
| Strand | + |
|---|
| Start bp | 2166391 |
|---|
| End bp | 2169387 |
|---|
| Gene Length | 2997 bp |
|---|
| Protein Length | 998 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642776458 |
|---|
| Product | PAS domain protein |
|---|
| Protein accession | YP_002147083 |
|---|
| Protein GI | 197250342 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3447] Predicted integral membrane sensor domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTAATGA GTAAACCATC CCAACATGTT TTCGTTACCG TCCCCCACCC GCTATTGCGT
CTGGTCAGTT TAGGCCTGGT CGCGTTTGTC TTTACGCTCT TTTCGCTCGT ATTATCGCGT
GTCGGCACCC AACTCGCGCC GCTGTGGTTC CCCACCTCCA TTATGATGGT CGCGTTTTAC
CGCCATGCGG GCCGTCTGTG GCCAGGGATC GCGGTCGCCT GCTCGCTCGG CAGCATCGGC
GCCTCCCTGA CTTTATTTCC TGCCGCCTCG CTTAACTTTA GCTGGACGGC AATAAATATT
ATCGAGGCGG CCACTGGCGC GATACTGCTG CGAAAACTGC TCCCCAGCTA CAACCCCTTA
CAAAATTTGA ATGACTGGTT TCGTCTGGCT ATCGGCAGCG CCGTGATTCC GCCGCTACTC
GGCGGCCTGT TATTTTGGCT GATAGCGCCG GAAGCGGTCG CCTCGAAAGC GTTTCTGATT
TGGGTATTAT CGGAAGCCAT CGGCGCGCTG ACGCTGGTGC CGTTAGGTTT ACTGTTTAAA
CCACACTATC TGTTGCGTCA TCGCGACCCG CATCTGTTGC TGGAAACGCT ATTGACGCTG
GTCATTACGC TGGCGCTAAG CTGGCTCGCT ATGCGCTATA TTCCGTGGCC GTTTACGTGC
GTTATCGTCC TGTTGATGTG GAGTGCGGTG CGCCTGCCGC GAATGGAGGC GTTTTTAATT
TTTTTAGCTA CCGTTATCGT GGTCTCGCTC ATGCTGGCCA ATGACCCCAC GCTGCTCGCC
ACGCCGAAAA CCGACGTGAT GGTCAATATG CCGTGGCTGC CTTTTTTAAT GATCCTGCTG
CCTGCCAATA TGATGACGAT GGTGATGTAC GCGTTTCGCA CGGAACGCAA ACATATCACC
GAGAGCGAAT CCCGCTTTCG CAACGCGATG GAGTATTCCG CCATTGGTAT GGCGCTGGTC
GGTACGGAGG GTCAGTGGCT ACAGGTCAAT AAATCTCTGA GCCATTTTCT TGGCTATAGC
CAGGATGAAT TACGCACGAT GACATTTCAG CAATTGACCT GGCCGGAAGA CCTGAATAAC
GACCTTGAAC AGCTAAACAT GCTGGTGCGC GGCGACATCA ACAGCTATTC CATGGAAAAA
CGCTACTACA CCCGCAACGG CGATGTCGTC TGGGCGCTGC TGGCCGTCTC GCTGGTTCGT
CATAAAGACA ATCAACCTCT CTATTTTATT GCTCAGATTG AAGATATTAA CGATCTCAAG
CAAAGCGAGC AGGAAAACCA GCGGTTGATG GAGCGAATTA CACAGGCGAA CGAGGCGCTG
TTTCAGGAAA AAGAACGGTT GCACATCACG CTTGACTCTA TCGGAGAAGC GGTGGTGTGT
ATTGATGTCG CGATGAATAT CACCTTTATG AACCCGATCG CCGAGAAGAT GAGCGGCTGG
CGGCAAGAGG ATGCTTTAGG CGCGCCATTA TTAACGGTTC TGCGCATTAC GTCAGGTAAT
AAGGGGCCGC TGCTGGAGGA TATTTATCGC GCCGACAGGT CGCGATCGGA CATGGAACAG
GAGATAGTGC TCCATTGTCA TAACGGCGGC AGCTACGATA TTCATTATAG TATCACGCCG
CTCAGTACGC TTGATGGCGA TAAGATTGGT TCGGTTCTGG TTATCCAGGA CGTTACCGAA
TCACGAAAAA TGTTACGCCA GCTCAGCTAC AGCGCAACGC ATGACGCCCT AACCCATCTT
GCCAACCGCG CCAGTTTTGA AAAACAGCTT CAACAGCGCC TGCAAACAAT ACAGGAATCG
CCTCAACATC ATGCGCTGGT GTTTATCGAT CTGGACCGTT TTAAAGCGGT TAACGACAGC
GCGGGACATG CCGCCGGCGA TGCCTTATTA CGCGAGCTCG CATCACTGAT GCTCAGTATG
CTTCGCTCCG GCGATCTCCT GGCCCGTCTG GGTGGCGATG AGTTTGGCCT GTTGCTGCCG
GATTGTAATA GTGACAGCGC GCGCTTTATC GTGACGCGGC TTATCAACGC CGTTAATGAG
TATCACTTTA TGTGGGAAGG ACGCCTGCAT CGGATCGGCG CCAGCGCCGG GATCACAATG
ATAAATGAAC ATAACTGCCA GCTCACAGAG GTCGTGTCTC AGGCCGATAT TGCCTGCTAC
GCCGCGAAAA ATAGCGGTCG AGGCCGTCTG ACCGTGTACG AACCGCAGCA CGCATTAACC
TCCTCAAAGG GAATGATGCC GCTGGAAGAA CAGTGGCATA TGATTAAAAA TAACCACCTG
CTGATGCTTG CCAGAAACGT CGCGCCGCCG CGTACGCCGG AGGCCACCAG CTTTTGGCTG
GTCTCACTCA GGCTGTGGAC CAGCGAAGGG GAAGTGATGG AAGAGCGCGC GTTCCGGGCA
GGGTTAGCCG ACTCCGCGCT GCATCACGCG CTTGACCGAC GGGTATTCCA TGAGTTTTTC
CACCATGCGG CGACCGCCGT CGCCAGCAAG GGATTAAGCG TTGCGCTGCC GCTGTCCGCC
GCGGGATTAT ACAGCGCGAC CCTTATTGAT GAGCTGCTGG AACAACTGGA GCATAGCCCA
CTGCCGCCAC GGTTATTACA TCTGATTATC CCGGCTGACG TTATCGTTAA GCAGGCGCAG
ACCGCCGCTG CGACTCTGCG AAAACTGCGG CAACGCGGCT GCCAGGTGAT TCTCAGCCAT
GTCGGGCGCG ATTTACAGCT GTTTAATTTA CTGCCCCCGC ATATCGTCGA TTATTTACTG
CTGGATAGCG ACCTTATCGC CAACGTTCAT GAAAGTTTAA TGGATGAAAT GCTGACCTCG
ATCATCCAGG GACACGCCCA GCATCTGGGC ATCAAAACGC TCGCCGGGCC GGTACAAAAC
CCACAGGTGC TGGATACGCT CTCCCGTATT GGCGTGGATC TAATTTATGG CGACACTATC
GCCGAAGCGC AACCACTGGA TTTGTTACTG AATACCAGCT ATTTCGCTAT CCATTGA
|
|---|
| Protein sequence | MVMSKPSQHV FVTVPHPLLR LVSLGLVAFV FTLFSLVLSR VGTQLAPLWF PTSIMMVAFY
RHAGRLWPGI AVACSLGSIG ASLTLFPAAS LNFSWTAINI IEAATGAILL RKLLPSYNPL
QNLNDWFRLA IGSAVIPPLL GGLLFWLIAP EAVASKAFLI WVLSEAIGAL TLVPLGLLFK
PHYLLRHRDP HLLLETLLTL VITLALSWLA MRYIPWPFTC VIVLLMWSAV RLPRMEAFLI
FLATVIVVSL MLANDPTLLA TPKTDVMVNM PWLPFLMILL PANMMTMVMY AFRTERKHIT
ESESRFRNAM EYSAIGMALV GTEGQWLQVN KSLSHFLGYS QDELRTMTFQ QLTWPEDLNN
DLEQLNMLVR GDINSYSMEK RYYTRNGDVV WALLAVSLVR HKDNQPLYFI AQIEDINDLK
QSEQENQRLM ERITQANEAL FQEKERLHIT LDSIGEAVVC IDVAMNITFM NPIAEKMSGW
RQEDALGAPL LTVLRITSGN KGPLLEDIYR ADRSRSDMEQ EIVLHCHNGG SYDIHYSITP
LSTLDGDKIG SVLVIQDVTE SRKMLRQLSY SATHDALTHL ANRASFEKQL QQRLQTIQES
PQHHALVFID LDRFKAVNDS AGHAAGDALL RELASLMLSM LRSGDLLARL GGDEFGLLLP
DCNSDSARFI VTRLINAVNE YHFMWEGRLH RIGASAGITM INEHNCQLTE VVSQADIACY
AAKNSGRGRL TVYEPQHALT SSKGMMPLEE QWHMIKNNHL LMLARNVAPP RTPEATSFWL
VSLRLWTSEG EVMEERAFRA GLADSALHHA LDRRVFHEFF HHAATAVASK GLSVALPLSA
AGLYSATLID ELLEQLEHSP LPPRLLHLII PADVIVKQAQ TAAATLRKLR QRGCQVILSH
VGRDLQLFNL LPPHIVDYLL LDSDLIANVH ESLMDEMLTS IIQGHAQHLG IKTLAGPVQN
PQVLDTLSRI GVDLIYGDTI AEAQPLDLLL NTSYFAIH
|
|---|
| |