| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3722 |
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| Symbol | |
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| ID | 4020284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4466677 |
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| End bp | 4470039 |
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| Gene Length | 3363 bp |
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| Protein Length | 1120 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637957786 |
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| Product | ATP-binding region, ATPase-like protein |
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| Protein accession | YP_564718 |
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| Protein GI | 91795067 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG3300] MHYT domain (predicted integral membrane sensor domain) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGATCC CATTAATGAA CTGGCTCATC GAACAGTTTC GCTACCCCGT TGACAGCCCC
TTAGTTTACG GCTCTTTTGA GCCCAAACTT GTGGCACTTT CCTTTATCAT CGCCATTTTT
TCATCCTTTA TGGCGCTACA GATAGCGGGC CAAGCAAGCT TATTGGAACA CAATTATCGT
CGCCATTTAT CCTTAGCGGC CGGTAGCGTG GCCTTGGGTG GTGGTGTTTG GTCCATGCAT
TTTATTGGCA TGCTCGCCTT CGAACTTTGC ACCCGAGTTG ACTATTCCTT AGGGATCACC
TTGATTTCCA TGATCCCCAG CATTGCCGCC TCTTGGGTTG CACTAAACCT CATTAGCAAA
GACAAGATCA AACCGCTACA ACTGATTGTT GGTGGTGTTC TGGTGGGCTC AGGCATAGGC
ACTATGCATT ACACAGGCAT GGCGGCGATG CAGATGTCCG CCATACTTAG GTACGACCCT
TGGTTTTTTG GCCTGTCCAT CATAGTGGCT GTGACCTTAT CCATACTGGC ACTGTGGATC
CGTTTTGGTT TAAGCAATAG CCGCTGGCCC TTGTCCAATG TCAGCTTGAA CCTCATCAGT
AGTACAGTCA TGGGACTTGC CATAGCGGGT ATGCACTATA CGGGTATGGC TGCTGCACGT
TTCATCCCAC CACCTGGGGT AGTACTAGAA CAAGCTAACA ATATCGGCTC AGGGCTACTG
GCCACAGGCG TGACCATAAC CACTATCGTC ATTACCGCTT TAGTCATAGC CATCAATCTC
GTCCTCAAAT ACCGTGAAGT GTCGCAAAAG GCCTTCGCCA ACGAGCAACG GCTTGAGGCC
ATGATGGAAA CTGCCGCCGA TGGTATTGTC AGCATCAATG CCAAAGGCAT AATCACAAGT
ATAAATCAGG CCATTACCGC CATGCTTGGC TGGGACAAAG CACAACTGAT TGGCCAGAAT
GTCTCCCTCC TGATGCCAGA GCCAGATAAG GGCCGCCATG ATTCTTATCT CTCCCGTTAT
TTGGCGACGA ATGAACCCCA CATCATAGGC AATGCTCGTG AAGTCACAGC CCTTCACAAG
CTAGGGCACA CAGTGCCAGT CAGGCTGGCC ATAGGTCATG CCAGATTGCC AAATGAAGAT
GTATTTGTTG GCTTTATCTC AGACATCAGT CAACGCTTGA AGATGGAGCG AGAGCTGAAA
GAAAATGAAG AAAAGTTTCG CTCTCTCATA GGCAATATTC CGGGCGCCGC CTATCGCTGC
TTGGATACCG AAGGTTGGCC CATGTTGTTT GTTAGCGACG CCGTCTTCGA TATTACCGGT
TATCCAGCGA GCGACTTTCT GCTGCCAAAT CCTGTGAGGA ACATCTGTGA CCTCTATCAT
CCCGAGCACC AAGAACTGTT GCAGTTTGAT GCCGATAAAA ACAAAACCTT CAGCCTGGAA
TATCGCATAA TAAGAAGCGA TGGAGAAATA AGATGGGTGC TTGAAACTGG CACCTACGTC
AAAGACCCCC AAGGAAGCGT GCTGTGGATG GACGGCTTCA TCATGGATAT CACTCCCCGC
AAGCAAATGG AGCAAGATTT GCAAAAGGCG AAAGAAGCCG CGGAGCTTGC CACCGAAGCG
AAAAGCGCTT TCCTAGCCAA TATGAGCCAT GAAATTCGCA CCCCAATGAA TGCCATCATA
GGTTTTAGCG ATGTGATGTT GACCACTGAT TTGGTGGCGG CGCAGCGTAA ATATGTCACC
ACAATCAACG CCTCGGCTAA TTCACTCTTA CACTTACTGA ACGATATCCT CGACAGTGCC
AAGCTGGAGA AAGGCCAATT ACAGCTCGAG ATGCAAGATT TCTCCCTAGC TGAAGTGATA
GACATGGTCA CCTCAACCTT ATCCATCCAA ACTCGTAAAA AGCGACTGGA TATCGAGCTA
TCCCTAGCGC CAGAGCTAGC TGAATACTAT TACGGTGCGG CAGACAGACT GCGCCAAGTA
TTGATGAATA TCGTCGGCAA TGCCGTCAAG TTCACCGAAA AAGGCCAAGT GCACCTTTCG
ATTAAGCCCA CACAGGATGG CAAAGTGTTG TTCAGCGTCC AAGATACCGG CATAGGCATA
GCCAGCGATC GCATTCAGCA TATTTTTGAA CCTTTTACTC AGGCTGATGC TTCCATGAGC
CGTCGCTTCG GTGGCACTGG ACTCGGGACA AGTATAAGCA AGCAATTGGT CAACTTAATG
GGCGGTGAGA TCTGGGCCAG CAGTGAACTG GGTAAAGGCA GCTGCTTCGA GTTTATCCTG
CCATTGAAAG CTGGAAAACC TGTCATTAAA ACCCGCAAAG GCAAGGCTAT CCAGCTTCCC
TCTCTGAATA TATTGATAGC CGATGATATG CAGCAAAATC TAGATCTGCT GCAGCTTCTG
CTTGAAAATG CTGGCCACAA GGTCACTGCT GTCACTGACG GTGCTCAAGC GGTACAGACC
ACCCAGCATC AGAACTTCGA TCTACTCTTG ATGGATGTAC AAATGCCCAT ATTGGATGGT
TTGTCGGCCA CTCGTCAGAT AAGAGTCAGA GAGCAAAAAT CTAACTCGCC ACCCTTGGCC
ATTATCGCCT TAACCGCAAG CGTGTTAACC GAGGATAAGC TTGCCAGCAG AAATGCCGGC
ATGGACGGTT TTGCCAGTAA ACCTGTGGAC TTCAACCTCT TGTGCTTCGA GATTGCCAGA
GTGCTGGAAT TGAACATCAC CGCCCAAGTA AGCATAAATA CCCAGATAAC CAGCTGTGAC
AGTCAGCTGA ATCAAGAGCA AGGAATAACA CTCTGGGGCA GCATATCAGC TCACGTACGT
GAACTTGATA CCTTTATTGA ACGTTATCAA ACGAGTACAG AACACTTTAT CAGTCTGCTG
GAAAATCAGG ACTACGACAC CTTGCGCCAG CTTGCCCACG CACTCAACGG CCTGTGTGGT
AATCTTGCCA TAGTGCAGTT GCCTCCTCTT TTACAGCAAC TGGAACAGGC TGCAAAAAAC
CAAAATAAAA CCGAATGCAC TAGCTTAATT ACAGCTTATG GGCTCAAATT CCAAACCTTA
GTGCAGGCGA TTACAGAGCT TGGGGCTACT GCACTGCGTA ACCAGTGCCC AACCCAATTG
ATCTCTGAAG ATGTTCTTCA CCAGCCCATC ACTGAGCAAG TAAACAAGCT TATCCAAGCG
GCGCAGCATA ATGAATATGA TGAACAGAGT TTATTGCTAC TGTCTCAGCA CTGTACTGCA
TCACAAAGGC AGTGGGTCGA GCAAATCGAA CAAGCGTTTG ATGACTTTGA ATTTGAGCAG
GCATTAGCCT TACTGAACCA ATTGAACTTA GATAACCGTG ACGGGGAGCA AACCAATGAA
TGA
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| Protein sequence | MRIPLMNWLI EQFRYPVDSP LVYGSFEPKL VALSFIIAIF SSFMALQIAG QASLLEHNYR
RHLSLAAGSV ALGGGVWSMH FIGMLAFELC TRVDYSLGIT LISMIPSIAA SWVALNLISK
DKIKPLQLIV GGVLVGSGIG TMHYTGMAAM QMSAILRYDP WFFGLSIIVA VTLSILALWI
RFGLSNSRWP LSNVSLNLIS STVMGLAIAG MHYTGMAAAR FIPPPGVVLE QANNIGSGLL
ATGVTITTIV ITALVIAINL VLKYREVSQK AFANEQRLEA MMETAADGIV SINAKGIITS
INQAITAMLG WDKAQLIGQN VSLLMPEPDK GRHDSYLSRY LATNEPHIIG NAREVTALHK
LGHTVPVRLA IGHARLPNED VFVGFISDIS QRLKMERELK ENEEKFRSLI GNIPGAAYRC
LDTEGWPMLF VSDAVFDITG YPASDFLLPN PVRNICDLYH PEHQELLQFD ADKNKTFSLE
YRIIRSDGEI RWVLETGTYV KDPQGSVLWM DGFIMDITPR KQMEQDLQKA KEAAELATEA
KSAFLANMSH EIRTPMNAII GFSDVMLTTD LVAAQRKYVT TINASANSLL HLLNDILDSA
KLEKGQLQLE MQDFSLAEVI DMVTSTLSIQ TRKKRLDIEL SLAPELAEYY YGAADRLRQV
LMNIVGNAVK FTEKGQVHLS IKPTQDGKVL FSVQDTGIGI ASDRIQHIFE PFTQADASMS
RRFGGTGLGT SISKQLVNLM GGEIWASSEL GKGSCFEFIL PLKAGKPVIK TRKGKAIQLP
SLNILIADDM QQNLDLLQLL LENAGHKVTA VTDGAQAVQT TQHQNFDLLL MDVQMPILDG
LSATRQIRVR EQKSNSPPLA IIALTASVLT EDKLASRNAG MDGFASKPVD FNLLCFEIAR
VLELNITAQV SINTQITSCD SQLNQEQGIT LWGSISAHVR ELDTFIERYQ TSTEHFISLL
ENQDYDTLRQ LAHALNGLCG NLAIVQLPPL LQQLEQAAKN QNKTECTSLI TAYGLKFQTL
VQAITELGAT ALRNQCPTQL ISEDVLHQPI TEQVNKLIQA AQHNEYDEQS LLLLSQHCTA
SQRQWVEQIE QAFDDFEFEQ ALALLNQLNL DNRDGEQTNE
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