Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3670 |
Symbol | |
ID | 4020227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 4386539 |
End bp | 4388941 |
Gene Length | 2403 bp |
Protein Length | 800 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637957731 |
Product | GGDEF domain-containing protein |
Protein accession | YP_564668 |
Protein GI | 91795017 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTGAGT ACCTGTATGA AAAAAATATA CTGGGTGATC AGCTCACTGA CTCTATTTCT AAGCAGTTAC AGCAAGATTT ATTTCGCATG CGCAGCGTGG TGGATTCGGC TATAGCGACT CAAGATATGC AGCGTATAGA GCAAGAAGTG GAACTCGTGG CGACAGAGCA AGATATGATG GTATATGTAC TGTTAGACGC CAATAGCCAA ATACATTTTG CCAATCATAC TATTTGGCGA AACAGTAACG CGGCTCATGT ATTAGAGGCC TACTCTGCCA AGACACATCA CGAGGCGGTG ACCCAGAATA GAGAAATAAT CCTGATTGAT TTTGAGAGTC TATCAATACA AGTCTATTAT CCCGTTTTTT CCAGTAGTCG CTCTCGTTAC TCCAGTGCAG TGGATGTGAT TTATCTTGAA TATAGCATTG CGATTATATT ATTTGAGGCC ATAGATAAGT TACAACAACG GCTAGAAACG GTTTGGGGAG TAGGGTTTTT ATTCATTTTA TTGTTTTATT TCATTTTCTA TCGACTGCAC ATCTCACCAC TGCGACGTCT GAGCCGAGCA GCAAAAAAAG TGGGTATGGT TAATTTTCAT TCTGACTCTG CCTTTTGGTC GGCTGAATTG AGTGTCTTGC ATCATTATTT GACTGATGTT GACGGTCGTT TAAAAAGGGC GACTAAACGC CTTAATGATG CAGAGCGCCG CTGGTTATTT AGCGTCGAAG GCTCTCGAAA TGGCATCTGG GATTGGAATA TTGCCACTGG CGCCATTTTT GTATCAGACA GATGGAAAGA GATCTTAGGT TTCGATGCCG GTGATTTAAC TAACGATTAT TTGGCTTGGG AGTCAAGGTT GCATCCCGAT GAGAAGTCAC AGGTACTCAA TACACTACAA AATTATATTA ATCATCAGAA AGAAGATTAT GAAAGTGTTC ATCGGCTAAA GCACAAGCAA GGCCATTATA TTTGGGTGCT CGATAAGGGC AAGATTGTTG AGTGGGATGA ACAGTCCAGA CCTATACGCA TTATTGGGAC TATTACAGAT GTCTCTGGTG ATGTGCAGCA TCATAGAGTT GCCATAGATA AACAAAGCCA TAATGGCTTA ACCGATCTGA TCAATCGCGA TGGTTTGGCT AATGCCCTAT TCGATTTACA AGTACAGTGT CGTCAAAGTG AAACGTCCGC AGCGTTAATT TTGGTTAGTT TAGATAATTT CAGTGTGATT AATGATGCAT TAGGTCGTCA GCTTGGTGAT AGATTACTGA TGCAAATTGC CGCGAGACTC ACCAGCACAT TTAGTGCAGT GGGCCTGATT GCTCGGTTAG GCACGGATGA GTTTGTGATG CTGGCAGCCC ACTTAGGGCC AGATGCTGAG CAAGCTAACC GTCGTGCATT AGCATTAGCA AGTGAAGTAA AGCAATTAAT CAGTAGAGGT TTTACTGTCT CTGAGCAGCA TTTATCTATT TCTGCCAAGG TGGGGGTGGT GGTGTTTGAT GGTATAGATT CTATCGAGCC TCATACTTTA CTGGCGCGGG CCGATACTGC GCTTAGCCAT GCCAATGATG CCGCGGAGGG GTGTATCTTG TATCAAGCCT CAATGGATAA AAACCAACTG CAGCCGGCTA AATTGCAACA AGCTTTGGCT GTAGCAATCG ATGCCGGGCA ACTCTCACTG GCCTTTCAGC CTGTAGTTGA TGTGGATGGC AATTTGGGCA GTATTGAGGT GCTTATCCGT TGGTATCATG TCGAATATGG TTTTATCGCC CCCACTAAAA TCATTGCAAC AGCAGAGCTC AGTGAAGATA TCGTTAAATT GGAACTATGG GTATTCGAGC AAGTTTGCAG CCTGATATTA GCACTCGAAC ATCAGCGGGT GAGTTCGCCG ATTTTCTCAA TCAATATTAG TGCTAGGTCG TTCCATCAAG AAGGTTTTAT CCAGCAGCTT AAACAGAGAA TGCGTCAATT CCCAATTAAG GGGACCCCAA TTCAACTCGA ATTGGCTGAA GAGGTATTTA ATGTTAATCC GCAAGCGGCT AGAAAACTTG TGCGTGAGTT GCAGGAGTTG GGCTTCTTAA TTGCGCTAGA CAATTTTGGT TTAAGCATGG GGACACTTCA ATATTTACAG GGTGTCAGCT TTTCACAGGT TAAATTGGCG CCACGATATT TGGATGGCAT CACCGACAGC GCACAGAGCA CTAAGTTGTT AGCTGCCTTG GTGAATATGG CAAGGGACTT GGGATATGCA GTAGTGGCAA AACACATTGA AAATAAAGAG CTGCTTAAGA TCACGACCGA AATACATTGT ACTTGGTTTC AAGGCTACAT AATCAGCCGC CCCTTGGTGG AGAAAGACAT ATTGCAGCTA ATTAAGTCTA AATTATCTCT GAGTGTTGGT TAA
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Protein sequence | MGEYLYEKNI LGDQLTDSIS KQLQQDLFRM RSVVDSAIAT QDMQRIEQEV ELVATEQDMM VYVLLDANSQ IHFANHTIWR NSNAAHVLEA YSAKTHHEAV TQNREIILID FESLSIQVYY PVFSSSRSRY SSAVDVIYLE YSIAIILFEA IDKLQQRLET VWGVGFLFIL LFYFIFYRLH ISPLRRLSRA AKKVGMVNFH SDSAFWSAEL SVLHHYLTDV DGRLKRATKR LNDAERRWLF SVEGSRNGIW DWNIATGAIF VSDRWKEILG FDAGDLTNDY LAWESRLHPD EKSQVLNTLQ NYINHQKEDY ESVHRLKHKQ GHYIWVLDKG KIVEWDEQSR PIRIIGTITD VSGDVQHHRV AIDKQSHNGL TDLINRDGLA NALFDLQVQC RQSETSAALI LVSLDNFSVI NDALGRQLGD RLLMQIAARL TSTFSAVGLI ARLGTDEFVM LAAHLGPDAE QANRRALALA SEVKQLISRG FTVSEQHLSI SAKVGVVVFD GIDSIEPHTL LARADTALSH ANDAAEGCIL YQASMDKNQL QPAKLQQALA VAIDAGQLSL AFQPVVDVDG NLGSIEVLIR WYHVEYGFIA PTKIIATAEL SEDIVKLELW VFEQVCSLIL ALEHQRVSSP IFSINISARS FHQEGFIQQL KQRMRQFPIK GTPIQLELAE EVFNVNPQAA RKLVRELQEL GFLIALDNFG LSMGTLQYLQ GVSFSQVKLA PRYLDGITDS AQSTKLLAAL VNMARDLGYA VVAKHIENKE LLKITTEIHC TWFQGYIISR PLVEKDILQL IKSKLSLSVG
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