Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3666 |
Symbol | |
ID | 4020223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 4381539 |
End bp | 4382318 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637957727 |
Product | flagellar biosynthetic protein FliR |
Protein accession | YP_564664 |
Protein GI | 91795013 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCTCAC TCACCTCGAC TCAAATCAGC ATGTTAATCG GCAGCCTATG GTGGCCTTTT TGCCGTATCA TGGGCGCTTT CATGATCATG CCTTTATTGG GTAATGCTTA TGTGCCTGTC ACTGTACGAA TTCTATTGTC CTTAAGCATT GCAGTATTAA TCTCTCATCT CATTCCTAGT GTTCCCCCTG TGGATGCACT GTCATTATCT GCGGTTTACC TCGCCATTGA ACAATTGCTT ATTGGGGTCA TGTTAGGCTT TATCTTGTAC TTATTACTGC ATGTAATGAC CTTGCTTGGC ACCATAATGT CCATGCAGAT GGGCCTCGCC ATAGCCATTA TGAATGACCC TGCCACAGGG GATGCCAACC CTATTCTGAG TCAATGGTTT TTATTGTTCG GCACGTTAAT TTTCTTGGCC TTAGATGGAC ACTTAGTCGC CATAGGCGTG CTTGTTGATA GTTTTCGCCT GTGGCCCATT GGCAGTGATT TATTCTCTCT TCCCTTATTG GGGTTTGTGC ATAGAGTCGG CTGGTTATTT GCGGCGGCCT TAATGCTGGC CTTGCCAGCC GTGCTGGCCA TGTTAATGGT GAACATTACC TTTGGCGTGC TAAGTCGCTC AGCACCGTCG CTGAATATTT TTTCCCTGGG TTTTCCTATG ACGATGTTAA TGGGGCTGCT CTGTGTCTTG CTATCACTGA GCGGTGTTCC CGAACGTTAT AGCGACTTAT GCTTAGAAGC GCTGGCCTTT ATGTATCAGT TTATTGGTGG TGCGGTATGA
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Protein sequence | MLSLTSTQIS MLIGSLWWPF CRIMGAFMIM PLLGNAYVPV TVRILLSLSI AVLISHLIPS VPPVDALSLS AVYLAIEQLL IGVMLGFILY LLLHVMTLLG TIMSMQMGLA IAIMNDPATG DANPILSQWF LLFGTLIFLA LDGHLVAIGV LVDSFRLWPI GSDLFSLPLL GFVHRVGWLF AAALMLALPA VLAMLMVNIT FGVLSRSAPS LNIFSLGFPM TMLMGLLCVL LSLSGVPERY SDLCLEALAF MYQFIGGAV
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