Gene Sden_3666 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3666 
Symbol 
ID4020223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp4381539 
End bp4382318 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content47% 
IMG OID637957727 
Productflagellar biosynthetic protein FliR 
Protein accessionYP_564664 
Protein GI91795013 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCTCAC TCACCTCGAC TCAAATCAGC ATGTTAATCG GCAGCCTATG GTGGCCTTTT 
TGCCGTATCA TGGGCGCTTT CATGATCATG CCTTTATTGG GTAATGCTTA TGTGCCTGTC
ACTGTACGAA TTCTATTGTC CTTAAGCATT GCAGTATTAA TCTCTCATCT CATTCCTAGT
GTTCCCCCTG TGGATGCACT GTCATTATCT GCGGTTTACC TCGCCATTGA ACAATTGCTT
ATTGGGGTCA TGTTAGGCTT TATCTTGTAC TTATTACTGC ATGTAATGAC CTTGCTTGGC
ACCATAATGT CCATGCAGAT GGGCCTCGCC ATAGCCATTA TGAATGACCC TGCCACAGGG
GATGCCAACC CTATTCTGAG TCAATGGTTT TTATTGTTCG GCACGTTAAT TTTCTTGGCC
TTAGATGGAC ACTTAGTCGC CATAGGCGTG CTTGTTGATA GTTTTCGCCT GTGGCCCATT
GGCAGTGATT TATTCTCTCT TCCCTTATTG GGGTTTGTGC ATAGAGTCGG CTGGTTATTT
GCGGCGGCCT TAATGCTGGC CTTGCCAGCC GTGCTGGCCA TGTTAATGGT GAACATTACC
TTTGGCGTGC TAAGTCGCTC AGCACCGTCG CTGAATATTT TTTCCCTGGG TTTTCCTATG
ACGATGTTAA TGGGGCTGCT CTGTGTCTTG CTATCACTGA GCGGTGTTCC CGAACGTTAT
AGCGACTTAT GCTTAGAAGC GCTGGCCTTT ATGTATCAGT TTATTGGTGG TGCGGTATGA
 
Protein sequence
MLSLTSTQIS MLIGSLWWPF CRIMGAFMIM PLLGNAYVPV TVRILLSLSI AVLISHLIPS 
VPPVDALSLS AVYLAIEQLL IGVMLGFILY LLLHVMTLLG TIMSMQMGLA IAIMNDPATG
DANPILSQWF LLFGTLIFLA LDGHLVAIGV LVDSFRLWPI GSDLFSLPLL GFVHRVGWLF
AAALMLALPA VLAMLMVNIT FGVLSRSAPS LNIFSLGFPM TMLMGLLCVL LSLSGVPERY
SDLCLEALAF MYQFIGGAV