Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3659 |
Symbol | fliF |
ID | 4020216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 4375051 |
End bp | 4376748 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637957720 |
Product | flagellar MS-ring protein |
Protein accession | YP_564657 |
Protein GI | 91795006 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGACTA ATGTGATCCA GTCTGAGCAA GAAATTCAAG GTGAAATACA GTCACCGAGC CTGTTTTCCA GTGCCGCTCA AGGTTGGCGT AGGTTTACCC AAGGCGACAA GCAGGTCATG GTGTTGGCGC TGTTGGCAAC CGTCGTCGCC AGTGTGATAG TGATCATGCT GTGGACGGCA AGCCAAGGAT ATCGCCCCCT CTATGGCAGC CAAGAAAACG TCGAAACATC TCAAGTTATT GAGGTGCTGG AAGCCGAAGG TATTTATTAT CGAATTGAGT CGCATACTGG CCTAGTTTTA GTGGCTGACG ATCAGTTGGG TAAGGCGCGT ATGTTGCTCG CTGCTCGCGG CGTTAAGGCG AAAGTGCCAT CAGGGATGGA CGAACTCGAC AGCTCAAGTT TAGGTACTAG CCAGTTTATG GAGCAGGCTA AATATCGCCA CGGGTTAGAA GGTGAGCTTG CCAGAAGCAT AATGTCACTT AAAAATGTGC GTTCAGCTCG GGTGCACTTG GCTATTCCTA AGCGCAGTTT GTTTATTCGT CAAACTCCTG AGTTACCTAC CGCTTCTGTG ATGTTGCAGC TAAGCCCTGG GGCAGAGTTA AGCCAATCTC AAGTGGAAGC AGTGGTCAAT TTGGTCGCCG GTAGCGTCAC TGGTATGGAG ACGTCTGGGG TTAAGATTGT CGATCAAGAG GGGCGTTTTC TTAGCGCCAA TATTAATGAA GATCAGGACA TGACCCAGGC TAGGGATAGG CAAATAACCT ATACCCGAGA GCTTGAGCAA AACCTGATGC ATAACGCCAG TTCTATGTTA GAGGCTATTT TAGGGCCGAA TAACTTTCAA GTGAAAATTG CCGCTAAGGT TAACTTTAAT CAAATAGAAG AAACCAAGGA AGCCTTAGAT CCTCAGTCTG TACTGGTACA AGAGCGTACC AGCTCAGATG ATAAAAATGC CGCCTTAGCC CAAGGGATCC CCGGGGCTTT GAGTAACCAG CCTCCACAAG CGGCAGAAGG TGATAAAAAA GACAACACTC GCAATCTGCG TCAGGAAGCC AATCGCCAAT TCGATGTCGG CCGTAGCGTG CGTCATATTC GCTATCAGCA GATGCAGCTA GAGAATATAT CTGTATCGGT ATTGGTCAAT AATACCGTCG CGACTGGGTT AACAACCGAT GATGCCGAGC TTACCAAGTT AGGCTCCATG GTGAAGGACG CCATAGGTTT TTCCAGCGAA CGTGGTGACA GCTTCAGCAT TAATGCTTTT GCCTTTAGCG TGCCAACGGT AGCGGAGTTT GAGCCGCTAC CTTGGTGGCA AGTCGAAGAT TATCAGGCGT ATTTACGTTA TCTCATCGGT GGCCTGCTGG GGCTTGGATT GATTCTGTTT GTGCTGCGTC CTTTAGTGTC ACACCTTACC TTCACCGCTA AACATGTCGA CAATGAAACC CGTGAGCCTG AAACCATTAA CTTAGCCAAA AGTGCAGAGT CCACCACGGC AGAAAGTAAT ACCACGACGC GGGCTGCAAT TAGCCAAGGG CATAGTGCAG AGAAGAGCAC TGCCGAATGG CTGGGCGGCT TGAATCTACC GGAGCCTGGC TCGCCGCTGA CAGTGCAAAT GGAGCATTTA GGCATGCTTG CAAATCAAGA ACCCGCACGA GTTGCTGAAG TACTCGCTCA TTGGATTGGT GATAAAGATG CAGACTAA
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Protein sequence | MSTNVIQSEQ EIQGEIQSPS LFSSAAQGWR RFTQGDKQVM VLALLATVVA SVIVIMLWTA SQGYRPLYGS QENVETSQVI EVLEAEGIYY RIESHTGLVL VADDQLGKAR MLLAARGVKA KVPSGMDELD SSSLGTSQFM EQAKYRHGLE GELARSIMSL KNVRSARVHL AIPKRSLFIR QTPELPTASV MLQLSPGAEL SQSQVEAVVN LVAGSVTGME TSGVKIVDQE GRFLSANINE DQDMTQARDR QITYTRELEQ NLMHNASSML EAILGPNNFQ VKIAAKVNFN QIEETKEALD PQSVLVQERT SSDDKNAALA QGIPGALSNQ PPQAAEGDKK DNTRNLRQEA NRQFDVGRSV RHIRYQQMQL ENISVSVLVN NTVATGLTTD DAELTKLGSM VKDAIGFSSE RGDSFSINAF AFSVPTVAEF EPLPWWQVED YQAYLRYLIG GLLGLGLILF VLRPLVSHLT FTAKHVDNET REPETINLAK SAESTTAESN TTTRAAISQG HSAEKSTAEW LGGLNLPEPG SPLTVQMEHL GMLANQEPAR VAEVLAHWIG DKDAD
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