Gene Sden_3605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_3605 
Symbol 
ID4020162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp4321930 
End bp4324551 
Gene Length2622 bp 
Protein Length873 aa 
Translation table11 
GC content44% 
IMG OID637957666 
ProductATP-binding region, ATPase-like protein 
Protein accessionYP_564603 
Protein GI91794952 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCATT TTGCGGGGTC AATTCTTAAC AGAAACAGAG CAAGCTCCCT CATAGCAAGT 
GCCTTACTTG CCATATGCAT CTTATGTCTG GGACTTACCG TCATCACGGG TTGGTACCTG
CAAAATATCA CCTTATTGCA AATTCACGAA TCATTTCCTC CTATGCAATA CAATACGGCG
TTGGGTTTTG TATTATCTGG TAGTTGCTTG CTGTTGTCTT TATATGGCTA TGCCAGAATG
GCGATGCTAG TTGGCGCTAT AGTGAGCCTA ATTGGTGGTC TTACCCTTAT CGAGATATAT
TTTCAATTGG ATTTAGGGAT AGATCAGCTG CTTATGGAGC CCTACGTTAC CATATCAACG
GCTTCGCCCG GTAGAATGGC ACCTAACAGC GCGCTATGCT TTCTCCTAAG TGGCATAGTG
CTAGTACTGG TCAATGCCAA TGCTAGATTC AATGAGATGA CCTTATTAGG CACAGTGATC
ATAGCCTTAG GCACTATTGC CTTACTGGGT TATGCCATGG GGTTAGAAAC GGCGTATGGC
TGGGGTTATT TAACTAAGAT GGCTATTCAT ACTTCAGTAG GGTTTATCTT ATTAGGTTTA
GGGCTGCTCT CTTGGGGCTA TAACATCTCC AGATTATCAG TCCACCATTT GCATATGAGA
AACCTGCTGA CAGCGGGATT AACCCTTCTT GCCTTTACAC TGTTACTCTG GCAAGCATTG
AATACTCAAA AAGACAATCA GATAGCCTCT AAACTTCAGC AGCAATTAGA AAACCATCAA
GCGGCTTTAT CTCTGGCCTT GGACAAGCAC TTACAGTCAT TAGAACGAAT GGCTGTGCGT
TGGGAGTCCA ATGGTGGTAC TTCTCAACAC GTCTGGGAAG CCGACGCCCA GACTTATATT
CGCGACTTTC CTATTTTTCA GGCTATCGAG TGGGTGGATG AGTCCTTTAA TGCTAACTGG
ATTGTGTCTC GCAGCAGTGA TGAAGAGGTA AAAGGATTAT TTATTGAGCA TGGGAGTGAA
AGACACGGGC TACTCACACA GGCGCTAGCT CGTGATAGCA CGACCATCAT TTCTCCCGTG
AAGCTAGTTC AGGGTGAATA TGGGCTGGTG GTCGTTAGGC CATTAGGTGT TGGCGGAGAA
TTTAATGGCT TTATTTTAGC GATCATTAGT GTTCAAAAAT TACTCGACAG TGTGGTGCCG
ACCTTGTCCA TCGCTGATGA TTTTCAATTT CAATTCAAAC TCTTCGACGG CGATACCTTA
ATTGCAAGTA ACCCCAGTAA CCTAGCAGAA CATACTGTTC AGCTTAAGAA AAGCAGCGAG
TTTTCTTTTA AAGAGAGCCT GTGGCGTACA GAACTTGCCT TGTTTAACGG GCCAAATACT
CAATCAGGTT CACTGTGGGC CCATAGTAAT ATCGTACTCT CCATTAGTGC TGTCATTTCT
GTTTTGATGC TGTTACTCAT GCATTTACGC TATCGTGAGC AAACAAGCAT CAAGCAGCTT
GCGCAACAAA TTGAGCTGGC TGAAAAGGAA GAGCGGCTGA GAGTCACCTT AGAGAATATG
TATGATGCCG TCATGTTGAT GGATAGTCAG GGAGGGGTGT TAAGTTTTAA TAAAGCCGCA
GAACAGATCT TTGGCTATTC AACCGATGAC ATTATCGGCA AGAATATACG TACCCTAGTC
GCTGAAATTG ACCATGGTGA GCCCAGGCAA AGCCTTGTCG ACAGTTTTTT GTCTCAAGAG
GTTGGCACTA TAGGTCAAAG CTTTGAGACG TTAGGGCGCA GAGCCAATGG CGAACAATTT
TTCATGACGA TAGCGGTTGT CGATATCACG CTCAATAACC AGCTGTTTTT CTCCGCCACA
GTACGTGACA TTAGTTTGCG AAAAGCCACT GAAAGCAAAA TGAAGCAATA TATGCTTCAT
CTAGAACGCA GTAATAAAGA GCTTGATGAT TTTGCTTATG TGGCCTCCCA CGACCTTAAA
GCCCCGCTTC GCGGCATCAT GCAGCTCGCC AGTTGGATCC GAGAAGATGT TCAAGACAGT
GCTAACACGC AAACATTAGA CTATTTAGCC TTGATGCAAA ATCGCATAAC TCGCTTAGAG
AATCTGTTAA ATGACTTGCT TGCCTATTCT CGTATTGGTC GTAAGCATGG AGAGTTTAAA
AGTATCAATG TCAGCGAAAT GGTGGCTGAG ACATTTAAGC TACTGAGCCC CCCAGTTAAT
TTCACCTTGA ATTGCAGCGT AGATTTACCT GACTTTAATA CCTTATCGAC CCCTTTTGAA
TTAGTCATGC GCAACTTGAT CAACAATGCG ATTAAGCACC ACGACTCGGA TTGTGGTGCT
ATCACTGTAA CGGCAAAAAA TATGCGTGAA CACATTGAAT TCACGGTTAA GGATGATGGC
CCAGGGATTG CGCCCGAGCA TCAGCAACGT ATTTTCGGGC TATTTCAAAC CTTAAAACCT
CGAGATGAAG TTGAAGGAAG TGGGATGGGA TTGGCCATTA TTAAAAAAAT TATTGAACGC
TATCATTGCA CTATCAATGT TGAATCTGAT GGTGTGCGCG GAACTCAATT TCAATTTACT
TGGCCTAAAT ACAATTTATT AAGGAGTTAT TTAGATGAAT AA
 
Protein sequence
MSHFAGSILN RNRASSLIAS ALLAICILCL GLTVITGWYL QNITLLQIHE SFPPMQYNTA 
LGFVLSGSCL LLSLYGYARM AMLVGAIVSL IGGLTLIEIY FQLDLGIDQL LMEPYVTIST
ASPGRMAPNS ALCFLLSGIV LVLVNANARF NEMTLLGTVI IALGTIALLG YAMGLETAYG
WGYLTKMAIH TSVGFILLGL GLLSWGYNIS RLSVHHLHMR NLLTAGLTLL AFTLLLWQAL
NTQKDNQIAS KLQQQLENHQ AALSLALDKH LQSLERMAVR WESNGGTSQH VWEADAQTYI
RDFPIFQAIE WVDESFNANW IVSRSSDEEV KGLFIEHGSE RHGLLTQALA RDSTTIISPV
KLVQGEYGLV VVRPLGVGGE FNGFILAIIS VQKLLDSVVP TLSIADDFQF QFKLFDGDTL
IASNPSNLAE HTVQLKKSSE FSFKESLWRT ELALFNGPNT QSGSLWAHSN IVLSISAVIS
VLMLLLMHLR YREQTSIKQL AQQIELAEKE ERLRVTLENM YDAVMLMDSQ GGVLSFNKAA
EQIFGYSTDD IIGKNIRTLV AEIDHGEPRQ SLVDSFLSQE VGTIGQSFET LGRRANGEQF
FMTIAVVDIT LNNQLFFSAT VRDISLRKAT ESKMKQYMLH LERSNKELDD FAYVASHDLK
APLRGIMQLA SWIREDVQDS ANTQTLDYLA LMQNRITRLE NLLNDLLAYS RIGRKHGEFK
SINVSEMVAE TFKLLSPPVN FTLNCSVDLP DFNTLSTPFE LVMRNLINNA IKHHDSDCGA
ITVTAKNMRE HIEFTVKDDG PGIAPEHQQR IFGLFQTLKP RDEVEGSGMG LAIIKKIIER
YHCTINVESD GVRGTQFQFT WPKYNLLRSY LDE