| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3602 |
|---|
| Symbol | |
|---|
| ID | 4020159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4316539 |
|---|
| End bp | 4319679 |
|---|
| Gene Length | 3141 bp |
|---|
| Protein Length | 1046 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637957663 |
|---|
| Product | hydrophobe/amphiphile efflux-1 HAE1 |
|---|
| Protein accession | YP_564600 |
|---|
| Protein GI | 91794949 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTT TCTTTATCGA TCGCCCCATT TTTGCTTGGG TGATAGCAAT GATCATCATG
CTGGCCGGGA TCTTGGCCAT CAAAGACCTG CCCATATCCC AATACCCAAG TATTGCCCCA
CCCACAGTGG TGATAGCGGC TAATTATCCG GGTGCTTCAG CCAAGACTAT GGAAGATACC
GTCACTCAAG TGATTGAGCA GCGTATGACG GGGCTAGATC ATCTGCGCTA TATATCCTCC
ACCAGCGACA GCTTTGGCAA TGCGCAAATC ACCTTAACTT TCAATGCCGA AGCAGATGCC
GATATTGCCC AAGTTCAGGT GCAGAACAAG TTGCAATCGG CCATGCCACT CTTACCCCAA
GAAGTGCAAG CTCAAGGGGT CAATGTCAGC AAATCCAGTT CAGGCTTCTT GATGGTATTA
GGTTTTGTGT CTGAAAATAG CAATTTGGAT AAGACAGATA TCGCCGACTA CGTGGCGGCC
AATATTCAAG ATCCCATGAG TCGAGTACCC GGTGTCGGCG ATATACAACT ATTTGGCGCC
CAGTACGCCA TGCGTATTTG GCTCGACCCG TTAAAACTAA CCCAGTACAA GCTCACCAGT
GTCGACATCA TAGCCGCCAT TAGAGAGCAG AATGCCCAAG TGTCAGCCGG CCAATTAGGC
GGCGCGCCCT CTGTACCAGG GCAAGAGCTC AATGCCACAG TATCGGCCCA GAGTCGCCTT
AAAACCGTAG CAGAATTTCA GCGCATTATT CTTAAATCAA GCACCACAGG CGCCAATGTT
TACCTTGAAG ATGTGGCCAG AGTGGAGCTT GGGGCCGAGA GTTATTCTGT GGTGTCGTTT
TATAATGGCA AACCCGCTGT TGGACTCGCT GTCTCCTTAG CCACTGGAGC TAACGCCTTG
GACACGGCCG CAGCCGTTCG CAGTAAAATA GATGAGTTAA CCCCCTTTTT CCCTCAAGGC
ATGACTGTCG TTTATCCTTA TGACACGACC CCCTTCGTCA CCGAATCTAT TACTGGTGTG
GTGCACACCT TACTGGAAGC CGTGGTACTG GTTTTCGTTA TCATGTATCT GTTTTTGCAA
AACTTTAGGG CAACGCTTAT CCCCACTATT GCCGTGCCTG TTGTCTTGTT AGGCACCTTC
GCTATCTTGT CCATGGCGGG GTTTTCCATT AATACCTTAA CCATGTTTGC CATGGTGCTC
GCCATCGGTC TGTTGGTGGA TGATGCCATA GTGGTAGTGG AAAACGTCGA GCGTATTATG
TCTGAAGAAG GATTAAGCCC CTTAGAAGCA ACCCGCAAAT CCATGGACCA GATCACAGGC
GCTCTCGTGG GTATAGGGTT AACCTTGTCG GCAGTGTTTG TGCCTATGGC CTTTATGGCA
GGCTCGACAG GCGTCATCTA TAAGCAGTTC TCCATCACCA TAGTCTCTGC CATGGCACTA
TCTGTGTTAG TCGCAATCGT ACTCACACCC GCCCTGTGTG CCACCATGCT AAAACCCATT
AAGAAGGGTC ACACTCATAT AGAAACGGGC TTTTTTGGCT GGTTTAATCG TACTTTCGAC
AAGATGACCT CAGGCTATCA GCGTAATGTC GCCAGCATAC TTAAACGCAG TGTCAGGGTA
ATGATGATTT ACTTAGGTAT AGTGATCGCT GTGGGTTGGA TTTTCATGCG CATGCCAACG
GCCTTCTTGC CCGATGAAGA CCAAGGAATA TTGTTTGCCC AAACCATATT GCCCACCAAT
TCCACTCAAG AAAGCACTGT CAAAGTGTTG CATAAGGTCT CAGATTATTA TCTTAATGAC
GAGAAAGCAG CGGTTAACTC TGTGTTTACC GTTGCAGGAT TCAGTTTCGC TGGCAGCGGT
CAAAACATGG GCCTTGCCTT CATTAACTTA AAAGACTGGT CAGAGCGACA AGCCCCTGGA
TTAGATGTGG CCTCTGTGGC CGAGCGTTCC ATGGGATATT TATGGCAAAT GAAAGAAGCA
TTCGCCTTTG CCTTCGCCCC CCCCGCTGTG ATTGAGCTGG GCACCTCCAA TGGGTTTGAT
TTCTACCTTC AAGATAAGAG CGGCCAAGGC CACAAAAAAC TCATTGAAGC CCGTAATCAA
TTACTGGGCA TGGCGGCGCA GGACCCTAAG CTCACTGGAG TGCGCCCCAA TGGCCAGGAA
GATGCGCCTA TTTATCAGAT TGATATCGAC CACGCCAAAC TCAGCGCCCT AGGGATAGAC
ATAAGCAATG TCAACAGCGT ACTCGGTACA GCTTGGGGCG GCGCTTACGT CAATGACTTT
ATTGACCGTG GCCGAGTGAA GAAAGTCTAC CTTCAGGGTG ATGCACAATA CCGCATGCAA
ACGGCGGATC TTGATACCTG GTATGTGCGA AACAGCCAAG GTGAGATGGT GCCATTCTCG
GCGTTCGCCA CTGGGAAATG GGAGTTTGGA TCACCACAAC TGCAGCGCTT CAATGGCTTA
TCTGCGGTTA ACATTCAAGG GGCAACAGCT GCGGGCGTCA GCACAGGTGA TGCTATGGCC
GCGATTGAGG CCATGGTAGA AAAACTGCCT GCAGGCTTTG GCATCCAATG GAATGGCATG
TCCTATGAGG AACGCTTGTC AGGTAATCAG GCACCCGCCT TGTATGCCCT GTCTATCTTA
GTGGTTTTCT TGGTATTAGC CGCGCTCTAT GAAAGTTGGA CCGTGCCTTT GGCCGTGGTA
CTCGTGGTGC CATTAGGGAT CATCGGCGCC TTGATTGCCA TGAATGTTCG CGGCTTATCT
AACGATGTTT TCTTCCAAGT GGGCCTATTA ACCACTGTGG GACTGGCGAC TAAAAACGCC
ATTTTAATTG TGGAGTTTGC CAAGAAATAT TACGAGCAAG GTGGCGGTTT AGTTGAGTCC
ACCTTACACG CAGTGAAGGT ACGTTTACGA CCTATTCTTA TGACCTCATT GGCCTTTGGT
TTAGGGGTGT TACCGCTGGC GATTAGCACA GGTGTAGGGT CTGGCAGTCA GAATGCCATA
GGTACAGGCG TTCTAGGGGG CATGGTCAGC TCGACCTTCC TAGGGATTTT CTTTGTGCCA
CTGTTCTTCG TCATTGTAGA GCGTATCTTC AGTAAAAAAG ACAACGCCAA TGTCGAAGAT
AAGTCAAAAT CAGATAGTTA A
|
|---|
| Protein sequence | MARFFIDRPI FAWVIAMIIM LAGILAIKDL PISQYPSIAP PTVVIAANYP GASAKTMEDT
VTQVIEQRMT GLDHLRYISS TSDSFGNAQI TLTFNAEADA DIAQVQVQNK LQSAMPLLPQ
EVQAQGVNVS KSSSGFLMVL GFVSENSNLD KTDIADYVAA NIQDPMSRVP GVGDIQLFGA
QYAMRIWLDP LKLTQYKLTS VDIIAAIREQ NAQVSAGQLG GAPSVPGQEL NATVSAQSRL
KTVAEFQRII LKSSTTGANV YLEDVARVEL GAESYSVVSF YNGKPAVGLA VSLATGANAL
DTAAAVRSKI DELTPFFPQG MTVVYPYDTT PFVTESITGV VHTLLEAVVL VFVIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSMAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERIM
SEEGLSPLEA TRKSMDQITG ALVGIGLTLS AVFVPMAFMA GSTGVIYKQF SITIVSAMAL
SVLVAIVLTP ALCATMLKPI KKGHTHIETG FFGWFNRTFD KMTSGYQRNV ASILKRSVRV
MMIYLGIVIA VGWIFMRMPT AFLPDEDQGI LFAQTILPTN STQESTVKVL HKVSDYYLND
EKAAVNSVFT VAGFSFAGSG QNMGLAFINL KDWSERQAPG LDVASVAERS MGYLWQMKEA
FAFAFAPPAV IELGTSNGFD FYLQDKSGQG HKKLIEARNQ LLGMAAQDPK LTGVRPNGQE
DAPIYQIDID HAKLSALGID ISNVNSVLGT AWGGAYVNDF IDRGRVKKVY LQGDAQYRMQ
TADLDTWYVR NSQGEMVPFS AFATGKWEFG SPQLQRFNGL SAVNIQGATA AGVSTGDAMA
AIEAMVEKLP AGFGIQWNGM SYEERLSGNQ APALYALSIL VVFLVLAALY ESWTVPLAVV
LVVPLGIIGA LIAMNVRGLS NDVFFQVGLL TTVGLATKNA ILIVEFAKKY YEQGGGLVES
TLHAVKVRLR PILMTSLAFG LGVLPLAIST GVGSGSQNAI GTGVLGGMVS STFLGIFFVP
LFFVIVERIF SKKDNANVED KSKSDS
|
|---|
| |