| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3538 |
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| Symbol | ompR |
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| ID | 4020092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 4249487 |
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| End bp | 4250209 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637957596 |
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| Product | osmolarity response regulator |
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| Protein accession | YP_564536 |
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| Protein GI | 91794885 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000279148 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGTCAGG AAACATCGAA AATACTCGTC GTCGATGATG ATATGCGTCT GCGTTCATTA
CTGGAACGTT ACCTAGTAGA GCAAGGTTAT CAGGTTCGCA GTGCAGCCAA TGCCGAGCAA
ATGGACCGCC TACTTGAGCG TGAAAACTTC CACCTTTTGG TCTTGGATTT AATGCTCCCA
GGTGAAGATG GTCTGTCGAT TTGTCGACGC CTGCGCCAAC AAAATAACCC GATTCCCATC
GTGATGCTGA CCGCTAAAGG TGATGAAGTC GACCGCATTA TCGGCCTGGA ACTGGGCGCC
GACGACTACC TGCCAAAACC CTTTAACCCA AGAGAACTCT TAGCCCGTAT TAAGGCCGTG
ATGCGTCGCC AAGCCCCTAA GGTTCCCGGT GCCCCAGCGC AAGAGGAAGA GAGCGTCTCC
TTTGGTGAAT TCTCACTCAA CTTAGCCACC CGAGAAATGT ATCGTGGCGA AGAGAGTATC
GCCCTCACCA GCGGCGAATT TGCCGTGCTG AAAGTGTTAG TGAATCACCC CAGAGAACCC
TTATCGCGGG ATAAATTGAT GAATTTAGCC CGAGGTCGTG ATTATTCTGC CTTAGAGCGT
TCCATCGATG TGCAAGTGTC GCGTCTTCGC CGCCTTATCG AAAAAGATGC CACCAGCCCA
AGGTATATTC AAACCGTTTG GGGCCTAGGT TATGTGTTCG TGCCCGATGG TGAGGCTAAG
TAA
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| Protein sequence | MGQETSKILV VDDDMRLRSL LERYLVEQGY QVRSAANAEQ MDRLLERENF HLLVLDLMLP
GEDGLSICRR LRQQNNPIPI VMLTAKGDEV DRIIGLELGA DDYLPKPFNP RELLARIKAV
MRRQAPKVPG APAQEEESVS FGEFSLNLAT REMYRGEESI ALTSGEFAVL KVLVNHPREP
LSRDKLMNLA RGRDYSALER SIDVQVSRLR RLIEKDATSP RYIQTVWGLG YVFVPDGEAK
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