| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3457 |
|---|
| Symbol | |
|---|
| ID | 4020011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 4137880 |
|---|
| End bp | 4138917 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637957515 |
|---|
| Product | ATP-binding region, ATPase-like protein |
|---|
| Protein accession | YP_564455 |
|---|
| Protein GI | 91794804 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0871385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCA ATAATCTATT AAATAATTTA GTCACTGCCG TGCTGGTGAT AGATAAACAG
CTCAAACCCT GTTTTGCCAA CGCCGCGGCC GAGCAGTTGC TTGGCCTTGG CAACCATAGG
TTGTTAGAGA GCACCTTGCC TGAGCTATAC CAAGAACTCG CCATCGCCCC AAGCCTGCTG
CAAGACGCCA TAGCGTCAAA TCAGGGCCTG ACGGTAAATA CGGCTAGCCT AATGACCTTA
GATGGTCAAT TGCACACTGT GGATTTGACC CTAATTCCGT TAGAGAATGA TCCTCAATTT
GGCCTATTAG AGTTAAGGCA AGTGGACCAG CAGCGGCGCA TTCATCAGCA ACTCAACCTC
GATGCCCAGC AACAGGCAGC GCAATTTTTA GTGCGTAATC TCGCCCATGA AATCAAAAAC
CCCTTAGGGG GATTAAGAGG CGCTGCCCAG CTGCTATCAA GAGAGCTTAA AGAACCTGAG
CTTAAAGAAT TTACCAGCAT GATCATTGAA CAAGCCGACC GGCTCAGTAA CTTAGTCAAC
CGCTTACTTG GACCCCAACG TCCCAGCCAG CATAGCTTGC ACAACATTCA TCAAGTGGTG
CAAAAAGTAT TGCAACTGCT GGAAATGACC CAGCCTGCGA ACGTTACCAT AGTGCGTGAC
TATGATCCGT CCATCCCAGA TATGTCCATG GATCCCGAGC AATTGCAGCA AGCTGTCATC
AATCTGGTGC AGAACGCCAT CCAGTCCCTT GAGCAGTGTG GCGGTGAGAT TTTGATTAAG
ACCCGCACTC AACATCAGGT CACCATGGGA AATCGGCGCC ACAAACTCGC ACTGGCCTTG
TCCGTTATCG ACAATGGCCC AGGGGTGCCC AGCGAAATCA TAGACACACT ATTTTACCCT
ATGGTCACAG GGCGCGAGCA AGGCTCAGGT TTGGGGCTCT CCATCGCTCA CAATATCGCT
AGGCTTCATG GGGGCCGCAT AGATTGCACC TCCTCACCAG GGCACACGGA ATTTACCTTA
ACCTTGCCAT TTCAGTAA
|
|---|
| Protein sequence | MDSNNLLNNL VTAVLVIDKQ LKPCFANAAA EQLLGLGNHR LLESTLPELY QELAIAPSLL
QDAIASNQGL TVNTASLMTL DGQLHTVDLT LIPLENDPQF GLLELRQVDQ QRRIHQQLNL
DAQQQAAQFL VRNLAHEIKN PLGGLRGAAQ LLSRELKEPE LKEFTSMIIE QADRLSNLVN
RLLGPQRPSQ HSLHNIHQVV QKVLQLLEMT QPANVTIVRD YDPSIPDMSM DPEQLQQAVI
NLVQNAIQSL EQCGGEILIK TRTQHQVTMG NRRHKLALAL SVIDNGPGVP SEIIDTLFYP
MVTGREQGSG LGLSIAHNIA RLHGGRIDCT SSPGHTEFTL TLPFQ
|
|---|
| |