Gene Sden_3408 details

Gene Information

• Locus tag: Sden_3408
• Symbol: zntR
• ID: 4019956
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 4066256
• End bp: 4066771
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637957460
• Product: zinc-responsive transcriptional regulator
• Protein accession: YP_564406
• Protein GI: 91794755
• COG category: [K] Transcription
• COG ID: [COG0789] Predicted transcriptional regulators
• TIGRFAM ID: [TIGR02043] Zn(II)-responsive transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATCGTA TCGGTGAACT GGCAGCCCAA TGTGACATCA AGGCTGACAC CTTAAGATTC 
TATGAAAAAC ACGGACTATT AGCGCCATCG AGTCGTTCAG ACGCAGGCTA TCGACTCTAT 
AACGATCATG ATAAGGCCCG CTTAAGCTTT ATTATTCGTG CTAAAGCCGT GGGTTTTACT 
TTAAATGAAA TTGCCGAGCT GCTGTCCATT GAGCTGGATA AATCCAATTG GGCCTGCGCC 
GATGTTAAAG GCATGGTGGA CAGTAAGCTT GTTCAAGTGC AAGCCAAAAT CCAAGAATTG 
AGCCATTTTG CTAACTCATT GCAAAGTTTA TCGAATGCTT GCTGCGGTGG CCCTGAAAGC 
GCCGAGCATT GCTCCATTTT AGAGGCGTTG GAATCCAGCA GTAAAGAGCT TGAACCTAAA 
CCTGAGCGTA AACATCAACA CCAGCATGGG CACCGGTATG AAGATGAGCA TCAAGCTTGT 
GATCAAAAAA ACCATTCACA TCAACAGGAG CGCTAG 

 

Protein sequence

MYRIGELAAQ CDIKADTLRF YEKHGLLAPS SRSDAGYRLY NDHDKARLSF IIRAKAVGFT 
LNEIAELLSI ELDKSNWACA DVKGMVDSKL VQVQAKIQEL SHFANSLQSL SNACCGGPES 
AEHCSILEAL ESSSKELEPK PERKHQHQHG HRYEDEHQAC DQKNHSHQQE R