Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_3389 |
Symbol | |
ID | 4019937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 4043609 |
End bp | 4045318 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637957442 |
Product | type II secretion system protein E |
Protein accession | YP_564388 |
Protein GI | 91794737 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCTCAA CTGCGCTTCA TCTAGGCCTC TCCAATTTGT TTATTCGCAA GGGTCTCCTT AGCGAAGACA TCATGGCCTC CGCCATCGCC GATTCACGTA AAAATAAACA CTCGCTAGTA GCAACCCTGA TTAACGGCAA GCACTTATCC GCTCGTGAAA TTGCCGAGCT GTGCCATGAA GAATATGCCA CCCCGCTATT AGACTTAGCA GAATTCGATG TTGCCGCCAT CGCGGAAGAC TTATTAAATA AAAAACTTAT CGCCAAACAT CAGTGCTTAC CGCTATTTAA GCGCGGTAAT CGCCTCTATA TTGCTACCTC TGACCCCACC AATATTACCG CATTGGAAGA TTTTCAATTT AGCTTAGGCC TGCACGCCGA AGCCATTTTG GTGGAAGACG ATAAGCTCAG CAAGGCCCTA GAGAAGGTCA TCGAAGATGA TATTACTGGG TTAGATCTAA ACGGCATGGA TGAAGCCGCC CTCGCTGGCA TTGAAATCAC CGACACAGAC AAGCGTCATG AAGAGCCAGG CGGTGAAAGC AGTGACGATG CACCCATCGT TATTTACATT AATAAAATCC TCACCGATGC CATACGTAAA GGCGCCTCAG ATTTGCATTT TGAGCCCTAT GAGAAGCGCT ATCGCATTCG TTTTCGCATC GATGGCATAC TCCATGAAGT CTCAGAGCCG CCAGTGGCAC TTTCCGGGCG TATTTCGGCC CGCTTAAAGG TGATGTCAAA ACTTGATATT GCCGAGCGCC GCGTGCCACA AGATGGCCGC ATCAAGATGA AGCTATCCCG CACTAAATCT ATCGACTTTC GTGTTAGCAC CTTGCCCACC ATCTGGGGTG AGAAAATCGT AATGCGTATT TTGGACTCTT CATCGGCGCA GTTAGGTATT GAAAAACTTG GCTATGAAGA CGATCAACGC TTGCTCTATG AAGAAATGCT CGCCAAGCCT CAGGGGATGA TTTTAGTCAC AGGCCCCACG GGCTCAGGTA AAACCGTGTC CTTGTACACA GGTCTTAATA TTCTCAATAC CGAAGAGCGT AATATTTCCA CCGCAGAAGA CCCAGTTGAA ATTAACCTCG AAGGGGTGAA TCAGGTCCAT ATCAATTTAA AAGCCGGCCT GACGTTTGCG TCAGCCCTGC GCTCATTTTT GCGCCAAGAT CCGGATGTGG TCATGGTGGG TGAAATACGT GACTTGGAAA CTGCAGAAAT CGCTATTAAG GCGGCGCAAA CCGGCCACTT AGTGCTATCG ACACTGCATA CTAACTCGGC GGCGGAAACC CTAACCCGCC TCATTAACAT GGGTGTGCCT GGTTATAACA TTGCAAGTTC GGTGAATTTA ATTATCGCTC AGCGTTTGGC AAGGCGCCTG TGTCCCGAGT GCAAACATGC CGAAGATATT CCTGTGGCCG AGCTGCAGCG CTTAGGCTTT CAACAAGCTG ATATCGACAA AGGTTTCACT GTGTTTAAGC CCGTTGGCTG TGAGTTTTGC TCCGGTGGCT ATAAGGGCCG TTTAGGCGTA TATGAAGTGA TGAAGATGTC TGATGATATT GCCCGCACCA TAATGGAAGG CGGTAACTCA TTGCAAATTG CCCGCATCGC CAAAGAGCAA GGCATGCGGG ATTTACGCCA ATCGGGTCTG TTAAAAGTAA TCCAAGGCCT AAGTAGCATC GCCGAGATCA ATCGTATCAC CAGCTCTTAG
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Protein sequence | MPSTALHLGL SNLFIRKGLL SEDIMASAIA DSRKNKHSLV ATLINGKHLS AREIAELCHE EYATPLLDLA EFDVAAIAED LLNKKLIAKH QCLPLFKRGN RLYIATSDPT NITALEDFQF SLGLHAEAIL VEDDKLSKAL EKVIEDDITG LDLNGMDEAA LAGIEITDTD KRHEEPGGES SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PVALSGRISA RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT IWGEKIVMRI LDSSSAQLGI EKLGYEDDQR LLYEEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTEER NISTAEDPVE INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CPECKHAEDI PVAELQRLGF QQADIDKGFT VFKPVGCEFC SGGYKGRLGV YEVMKMSDDI ARTIMEGGNS LQIARIAKEQ GMRDLRQSGL LKVIQGLSSI AEINRITSS
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