| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3380 |
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| Symbol | |
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| ID | 4019928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 4027364 |
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| End bp | 4031803 |
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| Gene Length | 4440 bp |
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| Protein Length | 1479 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637957433 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_564379 |
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| Protein GI | 91794728 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTCTA TGCTAAAACC GTTTTTTGTT ATTCTTCTTT TATTCATCAG TTGCATTGTG
CCTTCCATGG CGCAAGAACT CGTGCAGAGA GTGTTTAGTG CCAGAGATGG CCTATCCACA
GCAACGATTA ATGACATAAG CTTTGGTGAG GATGGCTTTG TGTGGCTCGG AACTGAGCAG
GGGCTGTACC GATTAAGTAA CTCTAAGATC CGCCGAGTAG ACAAGACGGC AGGCGAGAGT
CAGCTATTCG ACAGTTATAT CAATTTAGTG ACCAATATCG ATTCGGATCA TCTACTCGTC
AGTAGCCAAA CTCGGTTATA CATCTATAAC ATCCCCACTA ATCGTTTCAC CGAAATGGGA
AAAACCTCAT CGAGCCGTTA CTTTGCTGAT GAAGGCGTTG TTTCCTATGT TAGGCAAGCA
GATGGTCAGT TACTCTTGTT GACATTTTCG GGCAAGTTGT ATCGCTTCAA CTCACAAGAT
TTTAGTTTAC AGCTCATACA TAAAGGCAAA CTTGACGATA AAGTCAATTG GCGTCACATG
CTACAGCTCA GTGACAACAG CTTACTGTTT GCCAGTGCCC ATACACTTGA GATGCGCAGC
GCTGAAGGCG AGCTACTGAC AAGCCTGCCT TGGAAAGAGT CCTATGGAGC GATACGGGGA
CTTTTTAGGG ATAGCAAAGG GCGATTATGG ATTTTGTCTA GCAAGGGCTT ACATAAACTC
GAACAGGCGA CCTCGAGCCT AGAAATCATT TCAGAACTGC CTTATTTTAT GAGCCGAATG
CTAGAAGACA AGCAGGGGAA CTTGTGGATT GCGAGCCGTA AAGGCTTGAT CTTATGGCGA
CCCGAAACGG CTGATTATGT GCTCTATGGT GATGAGCTTA AACAGCGGGC ACGGATAGAT
TATATTCATG ACATGGCCGT GGATGACAGC GGAATTATTT GGGTGGGGGG CTCTGGAGAT
GGTCTGGCGC TGATTGCTCC CCAAGCTGAC TTTTTAAGGG ATGTTTACAG CAAAAGTTCA
AAATATAAAC TCGACACTGA GATGGTGTGG TCCATTTATT CCGAGGGAGA TAAAACCTGG
CTGGGTACAG ATGGCAGCTT AGCCGTTATC CATGAGTCCA GCAGCACGTC TCAGGGTATC
ATCCCTCCAG GTTTTGAGGT GAATGACAGC ATTTATCGGC TTAATAGTTT GAATGCTGAT
TATCTCGTGC TGGGTACCAG TAATGGTTTG TTTGTGGTGC ACAAACAAAC GGGCGAAAGT
ATGAGTTTTG CTACTTGGAC TCAGGGAATT GAGTCATTGA CGGGCCAAAT CGTATTGAGC
ATAGAAGCTG ACTGGAGTAT GCCAGGTCGT CTCTGGTTTG GTACCAATAA AGGCTTATAT
TATTGGCAGT CTGGGATGAA AGATCCTGTG GAACATGTTT TAGCACTAGG ACAAGATGCC
CCCTCTCGTA CCATTATTTT TGCGACGCTG CGTGATAGTT TAGGCAGACT CTGGCTATCG
GGTAACCGCT TCTTCGGTTA TTTGGATGAA CAAGGTCAAT ATGTCTCTAA ACTAGGGCTT
TTTTCTCAAG AAATACCGTC GAAAATCGGC TCGTTTCTGG AGGTTTCTCC CGGAGTGATT
TGGTTTGCTT CCCTGCAGCA AGGCCTGTTT GAATACCAAA TCAGCACTGA TAGTCTGCAC
TCTTTAACCC GAGATTGGCA GCTCGACTGC GATGCAATTT TATCTATGGT GAGCACAAAG
ACGGCCAATT TTATCCTGTG TAATGCCATT TTGGTGCGCC AAGATAAAAC CACTGGCGAA
ATAACCACGC TAGATCAGAA TGATGGTTTT ATCTCTGATG AATTTAACGA AGGCAGTGTG
TTTTATCGGC AGGATAAAGG GCTCTATCTA GGCAGCCCTG ATGGGGCTAT GTTAGTTGAA
CCTAATAAAT TACAGCATCG TCAAAACACC AATCGCGTGT TTCTCGAATC TGTCTCTGTC
TATTATGGCA AAGACACTCA TACCTATTTG CGACCCCAGG CGCTGAGTGT CATAGAGCCT
GGGGCAAACC TTATCAGTTT TCAGCTGAGC AGCACAGATT ACCTCGATGA TACACCACTC
ACCTTACAAT ACCGTATTTT GAAAAAGAAC GACCCGTCGG AGCGGCCATT TTTGCTACTG
GAAGATCAGT CTCAGCTGAA TATTTCAGGT CTGAATGCGG GTGAATATAC CTTAGAAATT
AAGCATAAAA ATAACGGTGT CTGGGTGAGT GATGCCTATC GTTTCGATTT TGAGTTGACA
CAAAATTGGT GGCAATCCCA ATGGTTTAAA TGGCTTGTGT CCTTGTGTAT TTTCATCGCA
TTCATTTCCA TGCTCTGGTA TCGACATCGG CAAGTCGAAC GATTTAAGAA AATCAATCAG
GCATTAGTGG ACAGTGATGA CAGATTAAGG CAGGCGTTGC GAGGCAGTGA CTCAGATCTG
TGGGAGTGGC GCAGCGATAC GCAAATGATT TATTTGGATA ACAACGCGGG CTTATTAGGT
GATGCAGATT TTGTACATTG CCCTCTGTCA GAATTGCCAG TACATGAGAA TGACAGGGAT
AGGGTCCGTG GGGAATGGAT AGCCTTGCTT GAAGATAAAG GTGAACTGTT TGAGTCAGAA
TATCGTTATT ACCGACCCGA TGGCAGTTGT GGTTGGTTAA GGGTAAGGGG CAGGGCTGTG
GATTATCAGC CTGGCACTGG CGCCATTGCA CGGGTGGCAG GGATTTACAG TGATATTTCA
GTTCAGCGAG AGCTTGAAAG TGAGATTAAT TTATTAGCCC AAGCCTTTGA GAATACTACC
GAAGGTATGC TGATCCTGGA TGCAAATGAA ACTGTGATCA TCAGTAACTT GGCGGCAAAT
TTAATTTTCA CCACTAAACC TAATGAACTC ATAGGCTTGT CATTATCTGA GTTGGTGCGT
AAGAGTGAGA TAAACTTGAG TGTCGATGGG TTGCTCGGCA ATGGTACCTC ATGGAATGGT
GAGCGAGAAT TACTTCGCCG AGATAAGCGC ACTTTTCCGG CTTGGATCAA TATTTCAATG
ATGAAAGCAG AAAACAGCCT AATTAAACAT TATGTGTTGG TGTTTTCAGA TATTAGCGAG
CGCAAACAGA ATGAACTTAA CTTACGTTAT TTAGCCAATA ATGATGTGCT TACAGGGCTT
GCCAACCGCG CCATGTTTAC GCGGCGCTTG ACGCAAATTA TTTCGTTCGC GACATTAAAT
GATGAAAAAC TGGCCTTGTT ATTCCTAGAC CTAGATAGGT TTAAACATGT TAACGATTCT
TACGGCCACA GCATGGGGGA TGCCCTGCTA GTGGAGGCTG CGCGGCGGTT GCAATCTTGC
CTGACAGAGA ATCACCTCGT GTGCCGTTTT GGTGGCGATG AGTTTGTTAT CTTACTGCGA
GATGCAGGGG ATATCGATGG TATTAACCAT GTGGCAGACA GTTTATTAAA GACTATAGAG
CAGCCTTTTA AACTAGAAGG GCGTGAGTTC TTTATTTCCA CCAGTATTGG CATTAGCGTG
TGGCCCGATG ACAGTATCGA TCCCGAAACC TTAATAAAAA ATGCCGATTT AGCCATGTAT
CACGCCAAAG AGGAAGGTCG GGGGAATTTC CAATACTATT CATCTGAACG TAATGCCGAG
GCACTGTATC ATTTACGCCT TGAGGCGGAT TTACGTAAAG CCATAGAGCG TGACGAGTTT
ACCCTTAACT ATCAACCTCA AGTGGATATT TTACATCAAG ACAGGGTGGT TGGTGTGGAG
GCATTGATCC GTTGGCACCA TCCTGAAGAT GGCTTAATTA GGCCAGATAT TTTTATTAAA
GTGGCCGAGT CTTGCGGCCT GATTGTGGAT ATCGATCGCT GGGTATTTAA ACAAGCCTGC
CAAGATGCGG CCCGTTGGCA TACTGAATTT GAACAATCCT ATAAATTGTC GGTTAATGTG
TCCGCGGTGA GTTTTAGACA GGCAGATTTT ATTGACGGTT TGAAAGACAT ATTAACAGAA
ACAGGCATGC CGGCGTCTTT GTTGACGGTT GAAATTACCG AAGGCGTGTT AATGAAAGAG
CTGCATGTGG CCAAGGCCCA CCTGCGTAAA CTTAAAGCCT TAGGGGTTAA AGTCTCTATC
GATGATTTCG GCACTGGCTA CTCATCTTTG GCGTATTTAC GTCACTTCGA GGTGAATAGC
CTTAAGATAG ACAGGTCCTT CTTGATTGAC ATAGGCGTTA ATAAAGCCGA TCAGGCCATT
GTCAGCAGTA TTGTTGAACT GGCACGTAAT TTAAAGCTTG AGGTGGTTGC CGAAGGGGTG
GAATCTCATG AACAGCTTGA GCAAGTGTTC AGCCGAGGTT GTTATCTTAT TCAAGGCTAT
TATTTTGCCA AACCCATGGC AAGAAATGAG CTGGAGATAT ATCTGGGGCT CGACAGTTAA
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| Protein sequence | MPSMLKPFFV ILLLFISCIV PSMAQELVQR VFSARDGLST ATINDISFGE DGFVWLGTEQ
GLYRLSNSKI RRVDKTAGES QLFDSYINLV TNIDSDHLLV SSQTRLYIYN IPTNRFTEMG
KTSSSRYFAD EGVVSYVRQA DGQLLLLTFS GKLYRFNSQD FSLQLIHKGK LDDKVNWRHM
LQLSDNSLLF ASAHTLEMRS AEGELLTSLP WKESYGAIRG LFRDSKGRLW ILSSKGLHKL
EQATSSLEII SELPYFMSRM LEDKQGNLWI ASRKGLILWR PETADYVLYG DELKQRARID
YIHDMAVDDS GIIWVGGSGD GLALIAPQAD FLRDVYSKSS KYKLDTEMVW SIYSEGDKTW
LGTDGSLAVI HESSSTSQGI IPPGFEVNDS IYRLNSLNAD YLVLGTSNGL FVVHKQTGES
MSFATWTQGI ESLTGQIVLS IEADWSMPGR LWFGTNKGLY YWQSGMKDPV EHVLALGQDA
PSRTIIFATL RDSLGRLWLS GNRFFGYLDE QGQYVSKLGL FSQEIPSKIG SFLEVSPGVI
WFASLQQGLF EYQISTDSLH SLTRDWQLDC DAILSMVSTK TANFILCNAI LVRQDKTTGE
ITTLDQNDGF ISDEFNEGSV FYRQDKGLYL GSPDGAMLVE PNKLQHRQNT NRVFLESVSV
YYGKDTHTYL RPQALSVIEP GANLISFQLS STDYLDDTPL TLQYRILKKN DPSERPFLLL
EDQSQLNISG LNAGEYTLEI KHKNNGVWVS DAYRFDFELT QNWWQSQWFK WLVSLCIFIA
FISMLWYRHR QVERFKKINQ ALVDSDDRLR QALRGSDSDL WEWRSDTQMI YLDNNAGLLG
DADFVHCPLS ELPVHENDRD RVRGEWIALL EDKGELFESE YRYYRPDGSC GWLRVRGRAV
DYQPGTGAIA RVAGIYSDIS VQRELESEIN LLAQAFENTT EGMLILDANE TVIISNLAAN
LIFTTKPNEL IGLSLSELVR KSEINLSVDG LLGNGTSWNG ERELLRRDKR TFPAWINISM
MKAENSLIKH YVLVFSDISE RKQNELNLRY LANNDVLTGL ANRAMFTRRL TQIISFATLN
DEKLALLFLD LDRFKHVNDS YGHSMGDALL VEAARRLQSC LTENHLVCRF GGDEFVILLR
DAGDIDGINH VADSLLKTIE QPFKLEGREF FISTSIGISV WPDDSIDPET LIKNADLAMY
HAKEEGRGNF QYYSSERNAE ALYHLRLEAD LRKAIERDEF TLNYQPQVDI LHQDRVVGVE
ALIRWHHPED GLIRPDIFIK VAESCGLIVD IDRWVFKQAC QDAARWHTEF EQSYKLSVNV
SAVSFRQADF IDGLKDILTE TGMPASLLTV EITEGVLMKE LHVAKAHLRK LKALGVKVSI
DDFGTGYSSL AYLRHFEVNS LKIDRSFLID IGVNKADQAI VSSIVELARN LKLEVVAEGV
ESHEQLEQVF SRGCYLIQGY YFAKPMARNE LEIYLGLDS
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