| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3344 |
|---|
| Symbol | |
|---|
| ID | 4019892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3985378 |
|---|
| End bp | 3987138 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637957397 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_564343 |
|---|
| Protein GI | 91794692 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0160309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTA AGTTAAAGAT GCGTCTTGGG GATTTACTGG TTCAAGAGCA GATCATATCC
GATGCACAAT TACAGCAGGC CCTTGGGGAG CAGCGTTCAT CTGGGCGTAA ATTGGGGCGA
ACCTTAATCG ATCTCAAGTG CATCACAGAA GAGCAATTGC TGCAGTTTTT ATCTCAACAG
CTTAATCTGC CATATTTGGA TATTCGCAGT AAGACCATCA GTGCCGATAC CGTTGCCCTG
CTGCCTGAAG TACAAGCCAG ACGTTTTCGC GCCTTAGTTA TCGAGAGCGA TGACGACAGT
GTGCTCGTCG CCATGAGTGA TCCGGCCGAC TTACAGGCCA TAGATAACAT TGAAGTATTG
GTAGCACCTA GGCAGTTACG GCTTGCTGTA GCGCCTGAGC AGCAGCTTCT GGATGCCTTC
GATAACCTCT ATCGCCGCAC AGATCAAATT GCAGAAATCG CCGGAAAGCT GGAAGAAGAA
TATGCCGCCG ATGATATGTT TGATCTTGCC AGCCTCACAG AGGGCGACAG TGATAATGAA
ACCACAGTGG TTAAACTATT ACAGTCCATA TTTGAAGATG CGGTGCAGAT GCGTGCCTCG
GATATTCATA TTGAACCTGG TGAGAAAGTA CTGCGTATTC GTCAGCGTAT CGATGGTCAG
CTGCATGAAA CCTTGCTCAA TGAGGTTAAT ATTGCCTCTG CCCTGGTGCT GCGCCTTAAG
CTGATGGCAG GCCTTGATAT CTCGGAGAAA CGCTTACCTC AAGATGGCCG TTTTCGCATT
GAAGTTAAAG GCCACAAAAT CGATATTCGT ATGTCGACTA TGCCCATCTA CCATGGCGAA
TCTGTGGTGA TGCGTCTACT GGATCAATCC GCTGGCCTAT TAACCTTAAA TGAAACCGGT
ATGCCGGCCA ATATTTTGGC AAGGGTTAAG CATCAGATAA AACGCCCCCA TGGCATGTTG
TTGGTGACAG GTCCCACGGG TAGCGGTAAA ACCACCACCC TATACGGTAT CTTGAGCGAG
CTGAACACGG CAGACCGCAA AATTATCACA GTTGAAGATC CGGTGGAATA TCAATTGCCT
AGGATAAACC AGGTTCAAGT CAATCATAAG ATAGGCCTAG ATTTCTCCAA CGTACTGCGC
ACCACCTTAC GCCAAGATCC CGACATCATC ATGGTGGGCG AGATGCGCGA CAGGGAAACG
GTAGAGATAG GCCTAAGGGG CGCATTAACC GGTCACTTTG TGTTATCGAC CTTGCATACC
AATGATGCCG TCACCAGTGC GCTACGCTTG CTGGACATGG GAGCAGCAAG TTACTTAGTC
GCCAGTGCAC TGCGAGTAAT TATCGCCCAG CGTTTGGTGC GTAAAGTGTG CGCTAATTGT
GTTAAAGATT ATCATCCAAG TGCTCAAGAT TTGGTATGGC TTGAGAAAAC CAGCAAGATT
AAAATTAACC CCGCCAATCT TAAGATAGGC TCAGGTTGTC AAAGCTGTAA TGGTTCAGGT
TATCGTGGCC GAGTGGGGGT GTTTGAGATT TTAGAGCTTG ACGATGTCAT GGTGGATGCC
ATGCGCTCAG GAGATCCGCA GCAGTTTGCT CGCGCCGCCC TGAAAAGCCC TAATTTTATT
CCGTTAGCCG ATTCTGCCAT GGCCTATTTA GATCAAGGCG TGACTAGCAT AGAAGAAGTG
GCCAAGCTCA TTGAAGACAT GAGCGAGTCA AAAGTCCCAT TATCTGAGGA CATTATTAGC
CAGCAAGGCA TTGAGGGATA A
|
|---|
| Protein sequence | MKPKLKMRLG DLLVQEQIIS DAQLQQALGE QRSSGRKLGR TLIDLKCITE EQLLQFLSQQ
LNLPYLDIRS KTISADTVAL LPEVQARRFR ALVIESDDDS VLVAMSDPAD LQAIDNIEVL
VAPRQLRLAV APEQQLLDAF DNLYRRTDQI AEIAGKLEEE YAADDMFDLA SLTEGDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGEKV LRIRQRIDGQ LHETLLNEVN IASALVLRLK
LMAGLDISEK RLPQDGRFRI EVKGHKIDIR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPANILARVK HQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDRET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRKVCANC VKDYHPSAQD LVWLEKTSKI
KINPANLKIG SGCQSCNGSG YRGRVGVFEI LELDDVMVDA MRSGDPQQFA RAALKSPNFI
PLADSAMAYL DQGVTSIEEV AKLIEDMSES KVPLSEDIIS QQGIEG
|
|---|
| |