| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3317 |
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| Symbol | |
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| ID | 4019865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 3951048 |
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| End bp | 3952883 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637957370 |
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| Product | DEAD/DEAH box helicase-like protein |
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| Protein accession | YP_564316 |
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| Protein GI | 91794665 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.289713 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCCA ATGAAAGAAC TTTCCGCGAA CTCGGCCTGT CTGAGAATTT GTTGCGTGCT
CTTGACGAGC TAGGTTATGA AAACCCTACC CCAATTCAAT CTGCTAGTAT CGATCCGCTT
ATGGCGGGTA AAGATATTAT CGGTCAGGCA CAAACAGGTA CAGGTAAAAC TGGCGCCTTC
GCTCTGCCGT TACTAAATAA AGTGGACATG AAAATCAATG CACCACAGAT TTTAGTCCTA
GCCCCAACAC GTGAACTCGC CGTTCAGGTT GCCGAAGCAT TCGGTAGCTA CGCTAAACAC
ATGAAAGGCT TCCACGTACT GCCGATTTAC GGCGGTCAAA GCATGCATCA GCAATTAAGC
GCCCTTAAGC GTGGACCACA AGTGATTGTT GGTACTCCTG GTCGCGTAAT GGATCACATG
CGTCGTGGCA CTTTAAAATT AGATTCATTA AAAGCACTCG TGCTTGATGA AGCTGATGAA
ATGCTAAAAA TGGGCTTTAT CGATGATATC GAATGGGTAT TAGAGCATAA GCCAAAAGAC
AGCCAACTTG CCCTTTTCTC TGCCACTATG CCAGAGCAAA TTAAGCGTGT TGCTGCTAAG
CATTTAACCA ACCCAGTGAA CATCAGCATT GCTGCTAGCA CAACGACAGT TGAATCTATC
GATCAACGTT TCGTACAAGT ATCACAGCAC AACAAACTTG AAGCCCTAGT GCGCGTATTA
GAAGTTGAAA ACACTGAAGG TGTTATCATT TTCGTTCGTA CCCGTAATAG TTGTGTTGAG
TTAGCTGAAA AGCTAGAAGC TCGCGGCTAT GCTTCATCGC CACTCCATGG CGACATGAAT
CAACAAGCCC GTGAACGCGC CGTTGATCAG CTTAAGCGTG GCAAATTAGA CATTCTAATT
GCAACAGATG TTGCGGCTCG TGGTCTAGAC GTTGAACGTA TTGGTCACGT AGTAAACTAC
GATATCCCTT ATGATACAGA AGCTTATGTT CACCGTATCG GCCGTACTGG TCGTGCTGGT
CGTACAGGTA TGGCAATTTT GTTTGTGACT AGCCGTGAAA TGCGCATGCT GCGCACTATC
GAGCGCGCCA CCAACAGCCG CATCGCTCCC ATGAAAGTGC CAAGCCCTGA GTCAGTGGCA
GAGCGCCGTT TGTCTCGTTT AGGCGAGCTA ATTCAAGAAA CCTTAAATGG TGACTTGGAC
TTCATGAAGA GTGCAGTTGC CGAATTATGC CAACAGCTAG AAGTTGATAC TGATTTACTT
GCCGCTGCAC TTTTACAGCA AGTACAAGCC GAACGTCCGC TGCAATTACC TGCCATCCAA
GAGCGTCAGC GTGATTCTCG TGATGAGCGC AGTGAACGTA GTGGCGAGCG CAGTGAACGT
AGTGGTGACC GCGGCGAACG CAGCCAGCGT CCACGTCGTG ATGCACGTCC AGCGCCTACT
AGCTTTGGTG GCCCAGAAGG CCTTAAAGAT AACCCAGACG TGAAGATGAA CCGTTATGTT
ATCGATGTAG GTCGTGATAA TGGTGTTGGT GTAGGTAACA TTGTTGGCGC AATCGCTAAC
GAAGCTAACC TAGACAGCCG TTACATAGGT CAAATCCAAT TGTACGATCA AGTGACTACC
GTTGATTTGC CTGATGGTAT GCCAAAAGAT GTACTGCAGC ACTTACGTAA AGTCCGTGTC
TGTGGCCGTG CATTAAACTT GCGTGAAGCA GGCAGTGAAA CGTTCGTTGA CTCAGGTCGC
AGCAGTGCAC CACGTAGCGA TCGTCCAAGC CGTCCACGTG GCGACCGTCC AGCAGGTGCT
GAACGTCGTC CACGTAAGCC AAGAGATAAC GGCTAA
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| Protein sequence | MSSNERTFRE LGLSENLLRA LDELGYENPT PIQSASIDPL MAGKDIIGQA QTGTGKTGAF
ALPLLNKVDM KINAPQILVL APTRELAVQV AEAFGSYAKH MKGFHVLPIY GGQSMHQQLS
ALKRGPQVIV GTPGRVMDHM RRGTLKLDSL KALVLDEADE MLKMGFIDDI EWVLEHKPKD
SQLALFSATM PEQIKRVAAK HLTNPVNISI AASTTTVESI DQRFVQVSQH NKLEALVRVL
EVENTEGVII FVRTRNSCVE LAEKLEARGY ASSPLHGDMN QQARERAVDQ LKRGKLDILI
ATDVAARGLD VERIGHVVNY DIPYDTEAYV HRIGRTGRAG RTGMAILFVT SREMRMLRTI
ERATNSRIAP MKVPSPESVA ERRLSRLGEL IQETLNGDLD FMKSAVAELC QQLEVDTDLL
AAALLQQVQA ERPLQLPAIQ ERQRDSRDER SERSGERSER SGDRGERSQR PRRDARPAPT
SFGGPEGLKD NPDVKMNRYV IDVGRDNGVG VGNIVGAIAN EANLDSRYIG QIQLYDQVTT
VDLPDGMPKD VLQHLRKVRV CGRALNLREA GSETFVDSGR SSAPRSDRPS RPRGDRPAGA
ERRPRKPRDN G
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