| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3243 |
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| Symbol | |
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| ID | 4019772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3876785 |
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| End bp | 3881044 |
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| Gene Length | 4260 bp |
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| Protein Length | 1419 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637957296 |
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| Product | Phage tail tape measure protein TP901, core region |
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| Protein accession | YP_564242 |
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| Protein GI | 91794591 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5283] Phage-related tail protein |
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| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.948991 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTTA AAGACCAAGT GGTTAATCTA ATTATTCAAG GCAAAGACCT GTTTTCCAGC
GAAGCCAAGA AGTCTGAGAA AGCCTTGCAG GAGCTGGGGC GGGAAAGTGA AAAACTCAAT
GAGCAGCTTG ACGATCTCAA ACAACAGCAG GCGGCGATTA AAGCCATTGA TGATCTAACG
TCGTCGATAA AAAAAGGTGA AAAGGCGTAT GTTGATAATG CTGTCGCGCT CGATAAGCTT
AAAAAAGAGC AAAAACAAGC GGCGACAGAT GCTAAGCAGC TTGAGCAAGC CCAAAGAGCG
GCCGCAATCT CGACAACTAA ACTTGAAACA GAATACAACC AAACGGTAAT TGAACTTGCT
AAGTATGATG CCCAGCTTAA GTTAGCGGGC GCAGAGGTTG AGCGCTTGGC CACGACTCAA
ACCAAAGGCG CTAATGCCAG CCAAGCCCAA ACGCAGGCGT TAGCCAAAGC GAAAGTAGAT
TTGCAAAAGC TGGCAGCGGT GCAAAAAAAT ACCGCAGCTA GCGCTAGTCG TTTAGCGACT
GAGCTCGAGC AAGAAACTGC AGAACTTAAG AAAATTAGCA TTGAAGTTGA TAAAGCCGGT
CAAAGAAAAG CTGAATATAC CCTTAAGGTT AGAACCGCCC GTACTGAGTT AAACCAACTG
GGCGCTAGCC TTGGCCGCAA TAAAGCCCAG TTAGATAAAC AGCAAGCCGT GCTCAATAAA
GCTGGGATCA GCATGGATAA GCTGGCCGAT GCGAGTAAAG ACTTAAAGGC TAAGCAGGCT
GCCGCTGAAC AGGCGCTGAA GGGGGTTAAC GATAAGCTAA GCCTGCATGA CAAATTACTC
ACTAATAGCA AAAAATCCTC AAAGGATGCC AATGCCCAAA CCGATTTAAC CACCAGGGCA
GTAAGGACGT TAGCCAAAGC CTATGCTGTG TTGCTGTCGG CGCAGCAGGC CGTACAAACA
GTAAAAAGTG GGGTTGAAAA TTACGGAGAG CTAGAAGCCG CCATTACCAA GGTAGAGAAA
ACCACAGGCA ATGCTCGCGA GGCGGTTGTC AAAATGGCGG CTGAACTTAA AGATCTTAGT
GAGAACGTGA CCCCAACTAG CACCAATGAA CTACTGCGCA TGGCAGAAGT TGCGGGACAA
TTAGGCACTA AATCTACCGA AGATATTTTA AACTTAGTTG CTGCCGCCGA TGCTTTGGGG
TTATCAACCA ACTTAGCCGG TGATGAAGCG GCAACCATGC TTGCACGTAT TTTGGGGATG
ACGCAGCAAG GTATTCCACA GATACAAAAT CTATCTTCTT CTGTCGTTGC ACTTGGTAAT
GATTTTGCGA TTACCGAAGC CGATATTGTG AGCATGACCA AGGAGATTGT TACAGGTACC
CGTGAAATTA ATTTAGGGTC TGCTGCGGCT GCGGCGTTTG GTACTACTCT TGCTGAGTTA
GGTCAGCCTG CGGAGCGCTC ACGCACCGCC ATTCAAAAGT TAGCAGCCTC AATCAATGAG
GCCAGTAAAA AAGGCGGTAA TGATTTAGAG CTACTGACTA AAATCACCGG CCAAACCGCA
GACCAAATTG AAAAAGACCT GGGTGATGCC CCTGAGAGAG TCTTAGTCAA ATTCCTTGAG
GGATTAAAGC GTGTTAAATC TGAGGGCGGG CTGGTTTCTG ATGCACTTAA GTCGATGGGC
ATTGAAGGTG TTGAAGCAAC AAGCGTGCTC AGTGTATTAG CAGATGGTAC CGACCGTTTA
AAAACGGCAT TGGAATTATC TAACAAAGCT TATATTGCTG GCGACTACCA CATGAAGGAA
GCCGCCAAAG CCTATGCTGA TCAATCGGCG GCGATTGGTC GCTTAGAAAA CAAATTCCAT
AGGCTAACAA CCAGTATTGG TGAGGCGTTC TCAGACGAAA TTGATACTGC AATAAGGGCG
ACTGGTGATG CAATTGATGC CGTAGATGAA AACGTTATTC AACTCATGGA GCGCATACCA
GAGTTAGCTG ATAGCTTTGT CGATTTACTT GCAGACATTA ATAATTTCGC GGCAGGCACT
GATGAGTCTT TTAGCGCCCT TCAGTACACA ATGGATGCCT TTGCTGCTGG TTTAAATACC
GTCAGCATAG GCGTAAATTC GCTGGCGTTA GAATTAAGCA ATATGAATGT GGCGACTCTC
GAAGCGCTTC GTTCAGCAAG TAAGCTTTCT GGTATTGAGT TTGTCACAGC AAAGCAAGTT
GCTGATGCTA AAACCCGTAG CACTACCATT GCAGCGGCAA TTAAGCGTGA TAGCGAAGAC
ATCATTACGC TTAATAAGCG CATGAGTGGT GAGTCGTCTA TTGCCTACGA AGGCTTAATT
AATACCACAG TAAAATACCG AGAAGCACTT AAAAAGTTAT CGGCAGATCA ACGCGGCCAA
ATAAGTAATA TCTTATTATC AGGTGCTTAC AATAAAGATC TTGAAACCAT CTACCGCGAA
CTAACGGCGG CTTTGGTGCG AGCAAATCGT GAAGTAGAAA TCGAAGCTCA ATTAAAAGAA
AAGGCGGCCG CAGCCAGTAA GAAAAAGGCT GAAAAAGATA AAAAAGCGGC TGATGCGGCG
GTTGAGCACG CCGATAACCT CGCTAAGCTA AATACCAGCA CCTTGACATA TACAGAGGCG
ATCGCTGAGG TTGAGACAAG GCAAAAGTCA TTAAATGAGC TTTATGCTAA AGGTGTGATC
TCTGCTGAAA GGTTGGCTAA AGCATCCGAG TTACTAACAG GCTCGCTCAA AAGTTATTCA
ACTGAGGTTA ATGCCAGTAA TGTCAGTACG ACAACACAAG CTGAATTAAC CGATCAGTTT
ATTGCTAAGC GCAAAGAGCT ACAGACCCAA TATGCACAAG GATTGTTAAC CGAAAAAGAA
CTGACTATAT CGCAACAAGA ATTGGCCAGC GCTTATGACA AAACGGTTAA CGAGATCAAT
CTTGTTACAA AGGGTACAGG CTTACTATCT GACGAACAGT TAGGCTTGCA AGAAAGTATT
ATTAGCACAG AGGCTGAAAT ACGCGTATTA GAGCAAGCCT TAAAGGACGA GAACAAGGCA
ACAAATGAAC TCCTTTTAAT TAAAGCCAAG TTAGCAAAGG AAGAAGCCAA CCTAGCTGAG
ATGAAACGTG AGTCTGTTGA GCTCTCTAAG ATAGAGAACG CCACCTATGT TGAGCTACTT
GTTTTACAGC GTGAGTATGA AAACCAATTA GAGATACTCG ACCGCAACTT TAGGGCAGGC
TTATTAACCA AGCAAGAGTA TGACGCTCAA TCAAAAACGC TTGAAAAAAC ATTATCTGAC
TTAAACAATG TTGTTGGCGA AAGTAGCCGC AAAAAAGCTG AAAACGCTGA AAAAACGAAA
GCCGCCACTG AGGCCGTTAA GGATAACACT GAAGCAAATA AAGAAAACCG CCAGTCTTTA
GAAGATCAAA CTGTTCAATA TATCGCGCTA CGTAATGCCA CCGTTGCCCA ACGAAGCGTG
ATACTCGACA CAGGTAAGAG TTATATTGAT ACTGCAGCAA GTGCTGATGA GTTAATTAGT
CGTATCCAGC AAATGGGTAT TTTGCAAACG GCATTCTTAG CCGGTGAAGA CAAACGCCGT
TACAGTGAAC TGCAAACTTC ATTATCAATA AGAAGGCAAA TTGATGACAT TGAAAGCAGC
ACATATAGCT TAGAAGCACT TGATAAAATG GCCAGCAAAG CGGCCAATGG CATGTTGGGC
TTGTCGGATG TGCAGTTACA GCCACTAACC AATGCCATTG ATAACGCGCG TGCTAAGTTC
CAAGATTTGG CCGATGACAT TAATGCGACC ACCTTGGATA TTCAAGATCG TTTAGATACG
GCATTGGGTA ACGAAAAGGA TGTCATTAAG CGTAAGTTTG CCAGTGAAAT AAAAGAGATA
GATGGCTTAA TTGCTAAGGC TCAAGCCTAT GGTAATAGCC AGTTAGTCAC TAAGCTGCAA
AAAAGCATGA GCGATCTAAA AAAGGCCCAA GATCTTGAAA TAAAAGCCCA GAAAGACGCC
AACGACAAGC AAGCCATTAT TGATGCTACT ACCACCACTA AACAGCAGCC CTCCTTCAGT
TCTGTGCCAA CCAATGCGAC AACCCAAACT CAGCCAAGAA TCATAACGGC CGCAAACAGT
AGCGATATCG TAATATTGCA GCTGCAAGTA GGTAACAGCA CGTTTGATGC GCAGGTCAAG
CGGAGCATAG TGAATGAGTT GATGAACGAG ATCAAACGCC TGCAATCCGT TGGCGGCTAG
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| Protein sequence | MSFKDQVVNL IIQGKDLFSS EAKKSEKALQ ELGRESEKLN EQLDDLKQQQ AAIKAIDDLT
SSIKKGEKAY VDNAVALDKL KKEQKQAATD AKQLEQAQRA AAISTTKLET EYNQTVIELA
KYDAQLKLAG AEVERLATTQ TKGANASQAQ TQALAKAKVD LQKLAAVQKN TAASASRLAT
ELEQETAELK KISIEVDKAG QRKAEYTLKV RTARTELNQL GASLGRNKAQ LDKQQAVLNK
AGISMDKLAD ASKDLKAKQA AAEQALKGVN DKLSLHDKLL TNSKKSSKDA NAQTDLTTRA
VRTLAKAYAV LLSAQQAVQT VKSGVENYGE LEAAITKVEK TTGNAREAVV KMAAELKDLS
ENVTPTSTNE LLRMAEVAGQ LGTKSTEDIL NLVAAADALG LSTNLAGDEA ATMLARILGM
TQQGIPQIQN LSSSVVALGN DFAITEADIV SMTKEIVTGT REINLGSAAA AAFGTTLAEL
GQPAERSRTA IQKLAASINE ASKKGGNDLE LLTKITGQTA DQIEKDLGDA PERVLVKFLE
GLKRVKSEGG LVSDALKSMG IEGVEATSVL SVLADGTDRL KTALELSNKA YIAGDYHMKE
AAKAYADQSA AIGRLENKFH RLTTSIGEAF SDEIDTAIRA TGDAIDAVDE NVIQLMERIP
ELADSFVDLL ADINNFAAGT DESFSALQYT MDAFAAGLNT VSIGVNSLAL ELSNMNVATL
EALRSASKLS GIEFVTAKQV ADAKTRSTTI AAAIKRDSED IITLNKRMSG ESSIAYEGLI
NTTVKYREAL KKLSADQRGQ ISNILLSGAY NKDLETIYRE LTAALVRANR EVEIEAQLKE
KAAAASKKKA EKDKKAADAA VEHADNLAKL NTSTLTYTEA IAEVETRQKS LNELYAKGVI
SAERLAKASE LLTGSLKSYS TEVNASNVST TTQAELTDQF IAKRKELQTQ YAQGLLTEKE
LTISQQELAS AYDKTVNEIN LVTKGTGLLS DEQLGLQESI ISTEAEIRVL EQALKDENKA
TNELLLIKAK LAKEEANLAE MKRESVELSK IENATYVELL VLQREYENQL EILDRNFRAG
LLTKQEYDAQ SKTLEKTLSD LNNVVGESSR KKAENAEKTK AATEAVKDNT EANKENRQSL
EDQTVQYIAL RNATVAQRSV ILDTGKSYID TAASADELIS RIQQMGILQT AFLAGEDKRR
YSELQTSLSI RRQIDDIESS TYSLEALDKM ASKAANGMLG LSDVQLQPLT NAIDNARAKF
QDLADDINAT TLDIQDRLDT ALGNEKDVIK RKFASEIKEI DGLIAKAQAY GNSQLVTKLQ
KSMSDLKKAQ DLEIKAQKDA NDKQAIIDAT TTTKQQPSFS SVPTNATTQT QPRIITAANS
SDIVILQLQV GNSTFDAQVK RSIVNELMNE IKRLQSVGG
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