| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3030 |
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| Symbol | |
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| ID | 4019555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3638981 |
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| End bp | 3640153 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637957081 |
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| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
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| Protein accession | YP_564031 |
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| Protein GI | 91794380 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000240164 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAGCA CCTCGGGCAC TGCCCAACAC ACGGCGCCGC AGCCACTAAC AACACAGCCA
CTAGCACCAC AGCAAGCCGC CGAACCACAA GTGCTGCTAA AGATAGATGG CGTGAGTAAG
TTGTTTGATG GCGTGCGTGC CGTAGACAAA GTGTCACTGA CTATCAATAA AGGCGAAATA
TTTGCGTTGC TTGGTGGCTC AGGTTCTGGC AAGTCGACCC TACTTCGCAT GCTTGCAGGC
TTTGAGCGCC CCAGTGAAGG CCGAATTTAC TTGGATGGCG TAGACATTAC CGACATGCCG
CCTTATGAGC GGCCAATCAA TATGATGTTC CAGTCCTATG CGTTATTTCC GCACATGACG
GTTGAGCAAA ATATTGCCTT CGGCTTGAAG CAAGATAAAT TACCTAAGGA TGAAATCACT
CAGCGAGTGG CAGAGATGCT CAAGCTGGTG CACATGGAAA AATACGCTAA GCGTAAGCCG
CAGCAATTGT CAGGTGGCCA GCGTCAGCGG GTGGCCTTGG CGCGCTCCCT TGCCAAACGG
CCTAAGCTGT TGTTATTGGA TGAGCCCATG GGGGCCTTGG ATAAAAAACT GCGTACTGAA
ATGCAGCTCG AAGTGGTCGA AATTCTCGAG CGTGTCGGCG TGACTTGCGT CATGGTGACC
CATGATCAAG AAGAAGCCAT GACCATGGCA GGGCGTATCT CCATCATGAG TGAAGGCTGG
ATAGCCCAAA CTGGCTCACC CATGGACATT TACGAGAGCC CCAATAGCCG CATGATCGCC
GAATTTATCG GTACGGTTAA CTTGTTTGAA GGTGATATCG TCGAAGATGA AGCGGCCCAT
GTGATCATCG CCTCTAAGAC CTTGTCGCAG CAGTTTTATG TGGACTATGG CGTCTCGACC
AGCGTGGAAG ACAAGCACGT TTGGCTGGCG CTGCGTCCAG AGAAAACCAT TATTTGCCGT
GAGCAGCCAG AGGGTGAATA CAACTGGGCC AAGGGTGTGG TGCATGACAT CGCCTATCTT
GGGGGCATTT CTGTGTACTA CATCAAGCTT GAAGATGGTC AAATCGTGCA GTCGAGCATG
GCCAACCGTG AACGTCGAAG CGATCGCCCG ACTTGGGAAG ACCAAGTCTT CATCAGCTGG
GAGGCCAGCA GCGGCATGGT ATTAAGATCA TGA
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| Protein sequence | MSSTSGTAQH TAPQPLTTQP LAPQQAAEPQ VLLKIDGVSK LFDGVRAVDK VSLTINKGEI
FALLGGSGSG KSTLLRMLAG FERPSEGRIY LDGVDITDMP PYERPINMMF QSYALFPHMT
VEQNIAFGLK QDKLPKDEIT QRVAEMLKLV HMEKYAKRKP QQLSGGQRQR VALARSLAKR
PKLLLLDEPM GALDKKLRTE MQLEVVEILE RVGVTCVMVT HDQEEAMTMA GRISIMSEGW
IAQTGSPMDI YESPNSRMIA EFIGTVNLFE GDIVEDEAAH VIIASKTLSQ QFYVDYGVST
SVEDKHVWLA LRPEKTIICR EQPEGEYNWA KGVVHDIAYL GGISVYYIKL EDGQIVQSSM
ANRERRSDRP TWEDQVFISW EASSGMVLRS
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