Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_2932 |
Symbol | |
ID | 4019457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 3500240 |
End bp | 3501727 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637956983 |
Product | sigma-54 factor, interaction region |
Protein accession | YP_563933 |
Protein GI | 91794282 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2202] FOG: PAS/PAC domain [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00176909 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTCAAA AAACAAACAC AACAACGTCT AGCGCGCATT TTTTGCCAGA AAACACTTTG TTACTGGACG CCGTCGGCGA AGGTATCTAT GGCTTCGACT TACAGGGTAA TGCGGTATTT ATTAACCCAG CTGCGCAAAG AATGACGGGC TGGCGTAATG ACGAACTCTT AGGGAAAAAC ATTCACAATT GTCACCACCA TAGCCATGCG GATGGCAGCC CTTACCCCCA AGAATCTTGC CCTATTTACC AGACCTTAAA AGATGGCGTG GCACGGGAAG TGGCCCAGGA TGTGTTCTGG CGTAAAGATG GCAGTAGCTT CCCCGTGCTG TACAGCTCTA CCCCTGTGTA TCAAGGGAGC GTCATGGTCG GCGTGATCGC GATATTTCGC GACATAAGCG TGCAAAAACA AACTGAGCTC TCCCTAAGGC AAGCACTTAA CCAGGTACAG GCCCTGTCGG AACAACTCGC CGCAGAAAAT CATGAGCTGC AGCAGGCATT AGCGGATAAA ACCGGTAACA TGGGCATTAA AGGCAGCAGC CCAGTGATGG CGCATTTACT ACAGCAAATA CACCTAGTCG CCAATACCAA CAGCACAGTG CTTATCTGTG GTGAAAGCGG TACAGGTAAA GAGCTTGTCG CCCGCAATTT ACATCAACTT AGCCGCCGTA AACATAAGCT AATGGTAAGC GTAAATTGCG CCGCCTTTTC ACCGTCATTA CTGGAAAGTG AACTCTTTGG CCATGAAAAA GGCGCCTTTA CTGGTGCTAA CACTCAGCGC AAAGGGAAAT TTGAACAGGC GGATAAGGGC ACACTGTTTC TCGATGAAGT TGCAGAGCTT TCCCTTGAGG CCCAGTCTAA ATTACTCAGA GTGATCCAAG AGCAAGAGTT CCAGCGTCTA GGCGGCAGTA GTAACATTAA AATAGATATT CGCCTCATTG CGGCCAGTCA CCACAATTTA CTCGAACGAG TAGAGCAAGG ACTATTTCGC ATGGATCTCT ACTATCGCTT AAATGTCTTC CCCATACATG TACCGCCCCT TAGGGATAGG CTTGAAGACA TGCCAGAGCT AGTAGAGAGC ATGTTGTTGA ATATTAGTAA AAAACTAGCC AAAAAAATTA CCTGTGTGAG TCAAGCAGGC ATGGCCGAGC TTAAGGCCTA CCATTGGCCT GGCAATGTAC GAGAATTACA GAACATACTC GAGCGTGAAG CCATATTGAG TCAGGCAAGT GAGCTTGATA TCCATCAATT GCCCTTTAAA GAGCTGTCAA AAATCAAGCC TTCAGCTAAC AGACAAACCT TAGCGCAAGC ACAGGCCACT CATATTCGCC ATACCTTAGA ACAACTCAAT TGGCAGATCT CAGGTGAACA TGGCGCAGCC AAACAACTTG GGCTGCCTGC GAGCACCTTA AGATCGAAAA TGCAAAAACT CGGCATAGTG CGACAAGATA CGACATCTCG ACAGCCCAAT AATGATAAGA ATCCCTAA
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Protein sequence | MVQKTNTTTS SAHFLPENTL LLDAVGEGIY GFDLQGNAVF INPAAQRMTG WRNDELLGKN IHNCHHHSHA DGSPYPQESC PIYQTLKDGV AREVAQDVFW RKDGSSFPVL YSSTPVYQGS VMVGVIAIFR DISVQKQTEL SLRQALNQVQ ALSEQLAAEN HELQQALADK TGNMGIKGSS PVMAHLLQQI HLVANTNSTV LICGESGTGK ELVARNLHQL SRRKHKLMVS VNCAAFSPSL LESELFGHEK GAFTGANTQR KGKFEQADKG TLFLDEVAEL SLEAQSKLLR VIQEQEFQRL GGSSNIKIDI RLIAASHHNL LERVEQGLFR MDLYYRLNVF PIHVPPLRDR LEDMPELVES MLLNISKKLA KKITCVSQAG MAELKAYHWP GNVRELQNIL EREAILSQAS ELDIHQLPFK ELSKIKPSAN RQTLAQAQAT HIRHTLEQLN WQISGEHGAA KQLGLPASTL RSKMQKLGIV RQDTTSRQPN NDKNP
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