| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2881 |
|---|
| Symbol | |
|---|
| ID | 4019406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3442743 |
|---|
| End bp | 3443702 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637956933 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_563883 |
|---|
| Protein GI | 91794232 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000784279 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCAA GAGCCAAACT TGTAGTGTTA GATGGCTTTA GCCTAAATCC GGGGGACTTA
TCTTGGGATA GGCTTAAGGC CCTTTGCGAT CTCACTGTTT ATGATCGCAG TATGGACCAG
CTGGCCCAGC GCTGTCACGG CGCCAAGATG ATATTAACCA ATAAGACGCC CATCACGGCG
GAATTAATGG CGAGTCTTCC CGAGCTTAAC TACATAGGTA TCTTGGCTAC GGGCACTAAT
GTCGTAGATC TGGAGGCGGC AAAAGCCAGG GGGATAGTGG TGACCAATGT ACCCGCCTAT
GGCCCCGATG CCGTGGCACA AATGGTGTTT GCCCACATAT TGCATCACAG TCAGCAGCTT
GCTTTACATG ACGCGGCAGT CAAAGCGGGG GAATGGAGTC AATCAGAGGA CTTTTGCTTC
AGCCTAACTC AGTTGGTGTC ATTGAAAGGT AAGCGGTTAG GTTTAGTGGG TTTTGGTGAT
ATCGCAACTA AGGTCGCTAA AATCGCGTTG GCATTTGAAA TGAAAGTATC GGTCAGCAGA
TTAAATAAAC ATAAACCTCT GCCACCCGAG GTGGAACATC TGAGCTTAGA TAGCTTATTG
TCCACATCCG ATATCATTTC ACTGCATTGC CCGTTAACCC AAGAGACGCA TCAGCTGATT
AATCAAGCGC GGCTTAAGCT GATTAAACCA AATGCGCTGC TAATCAATAC TGCCAGGGGC
GGTTTAATCG ACGAGCAGGC GCTGGCTTTG GCGCTCAATC AAGGCCGTTT GTTTGCCGGC
GTGGATGTAT TAAGCGCTGA GCCGCCTAAG CAAGACAATC CTTTACTCAG TGCCAGAAAT
ATCAGTATCA CGCCGCATAT TGGCTGGGCA ACTTATGAGG CGAGACAACA GCTGCTTAAT
ATAGCCATAG ATAATGTCGC CAGTTTTTTG CGCTCAGACA TCCGCAATCG AGTTATCTAG
|
|---|
| Protein sequence | MQPRAKLVVL DGFSLNPGDL SWDRLKALCD LTVYDRSMDQ LAQRCHGAKM ILTNKTPITA
ELMASLPELN YIGILATGTN VVDLEAAKAR GIVVTNVPAY GPDAVAQMVF AHILHHSQQL
ALHDAAVKAG EWSQSEDFCF SLTQLVSLKG KRLGLVGFGD IATKVAKIAL AFEMKVSVSR
LNKHKPLPPE VEHLSLDSLL STSDIISLHC PLTQETHQLI NQARLKLIKP NALLINTARG
GLIDEQALAL ALNQGRLFAG VDVLSAEPPK QDNPLLSARN ISITPHIGWA TYEARQQLLN
IAIDNVASFL RSDIRNRVI
|
|---|
| |