| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2876 |
|---|
| Symbol | |
|---|
| ID | 4019401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3437860 |
|---|
| End bp | 3438564 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956928 |
|---|
| Product | pseudouridine synthase, Rsu |
|---|
| Protein accession | YP_563878 |
|---|
| Protein GI | 91794227 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCTA AGCGAGCTAG GCTCGATCAA TTTCTTGCCG GTAAATTGCA AGTCCCCCGT
AAATCGGTGC GCTTTATGCT ACTGGCGGGT CGGGTCAGTG TAGATAACAT GATAATTAAA
GACATGGATC TTCAGCTTGA TGAGTTTAGC CAAGTGTGTG TGGATGGCGC GGCGCTGCAA
AATAATCAGC CCTGTTATTT GATGCTCAAT AAGCCTGTTG GCGTGGTGAG TGCTACCAAG
GATGATATTC ATAAAACGGC TTTGGAATTA CTCCATGGGA TAAAGCTTGA GATGCTGCAC
ATTGCAGGCC GTCTCGATTT GAACTCAAGC GGATTATTGC TTATCACCAA TGATGCCCGT
TGGTCAGAAG CCTTGATGTC ACCAGATAAC AAGGTGAGCA AAAAGTACCT AGTGACCTTA
GCCAATCCCA TCGATGAAAC CTATATCAGT GCGTTTGCAG GCGGCATGTA TTTCGCCTTT
GAGGGCATTA CGACCCAGGC GGCGGGGTTT GAAATACTGT CAGAGTATCA GGCGAGAGTG
AGCCTAAAAG AAGGCAAGTA TCATCAGATA AAACGTATGT TTGGCCGCTT TCGAAATCCG
GTTATTGGCC TTCACAGGGA AGCCATAGGG GAATTAGTAC TCGATGAAAC ACTGGCGCCA
GGTGAGTTTC GTCACCTGAC ACCAGCAGAA ATCGCACTGT TTTAG
|
|---|
| Protein sequence | MASKRARLDQ FLAGKLQVPR KSVRFMLLAG RVSVDNMIIK DMDLQLDEFS QVCVDGAALQ
NNQPCYLMLN KPVGVVSATK DDIHKTALEL LHGIKLEMLH IAGRLDLNSS GLLLITNDAR
WSEALMSPDN KVSKKYLVTL ANPIDETYIS AFAGGMYFAF EGITTQAAGF EILSEYQARV
SLKEGKYHQI KRMFGRFRNP VIGLHREAIG ELVLDETLAP GEFRHLTPAE IALF
|
|---|
| |