| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2867 |
|---|
| Symbol | valS |
|---|
| ID | 4019392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3423795 |
|---|
| End bp | 3426701 |
|---|
| Gene Length | 2907 bp |
|---|
| Protein Length | 968 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637956919 |
|---|
| Product | valyl-tRNA synthetase |
|---|
| Protein accession | YP_563869 |
|---|
| Protein GI | 91794218 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0525] Valyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA CATACAACCC TAAGTCTATC GAACAGGCCC TTTACCAAAA CTGGGAAGAG
CAAGGTTACT TCAAGCCCCA TGGCGATGAG TCAAAAGGCA ATTATTGCAT CATGATCCCG
CCGCCGAATG TCACCGGTAG CTTGCACATG GGCCATGCCT TCCAAGACAC CATAATGGAT
ACCTTAACCC GCTATCAACG CATGAAGGGC AAAAACACCC TTTGGCAAGT GGGTACTGAC
CACGCCGGTA TCGCCACCCA AATGTTGGTT GAGCGCAAAC TCGAAGCCGA AGAAGGCAAG
ACTCGCCATG ATTTGGGCCG TGATGCCTTT ATCGATAAAG TGTGGGACTG GAAAGCACAA
TCTGGCGGCA CTATCACCAA ACAGCTTCGC CGTATGGGCG CCTCAGTCGA TTGGGACAGA
GAGCGTTTCA CCATGGACGA AGGCCTGTCT AAAGCCGTTC AAGAAGTGTT TGTGCGCCTC
TATGATGATG AACTCATTTA CCGTGGCAAG CGCCTAGTTA ACTGGGATCC TAAGCTTCAT
ACCGCAATTT CAGACTTAGA AGTTGAAAAC AAAGAGAAGC AAGGCCACAT GTGGCATTTT
CGCTATCCTT TGGCTGAAGG CGCATTAACA GCCGATGGTA AAGACTATTT AGAAGTCGCC
ACCACCCGCC CAGAAACCAT GCTGGGTGAC AGCGCCGTCG CCGTGCACCC AGATGATGAG
CGTTACCAGT CACTCATTGG CAAATTCATT CTATTGCCCA TCGTTAATCG TTTAATTCCC
ATTGTGGCCG ACGATTATGT GGACATGGCA TTTGGCACAG GTTGTGTGAA AATCACCCCA
GCCCATGACT TTAACGACTA TGAAGTCGGT AAGCGTCATC AATTGCCTAT GTACAACATC
TTCACTCTAG ATGCCGCTGT GCGCAGTTTT GTAGAAGTCA TCAACACAGA TGGCACGCCA
AACAAAGACG TTGAACTTGC CCTACCTGAG CGTTACGTTG GCCTTGACCG CTTTAAAGCC
CGTGATGCTA TCGTTGCAGA GTTTGAGACC TTAGGTTTAC TTGGCAAAAT CGATCCCCAC
GGCTTAAAAG TGCCCTATGG CGATCGCTCA GGGGTGGTGA TTGAGCCATT ACTGACAGAT
CAGTGGTACG TTGCGGTTCA GTCTATGGCC AAAACCGCCA TCGAAGCGGT TGAAACCGGT
GAAATTAAGT TTGTGCCCCA GCAATACGAG AACATGTATT TCTCCTGGAT GCGCGACATT
AACGATTGGT GTATTTCGCG CCAGTTGTGG TGGGGACACC GCATTCCAGC TTGGTACGAT
GAAAACGGTA AGGTCTATGT GGGCCGCAAT GAAGCCGAAG TGCGCGCTAA GCATAAGCTT
GCGGACTCTG CCGTATTGCG CCAAGACGAT GACGTATTAG ATACCTGGTT TAGCTCGGCC
CTGTGGACCT TCTCAACCTT AGGCTGGCCT GACAACTTAG AAGACTTAAA AACCTTCCAC
CCAACCGATG TATTGGTCAC AGGTTTTGAC ATCATCTTCT TCTGGGTTGC CAGGATGATC
ATGATGACAA TGCATTTCAT CAAGGATGAA AACGGCAAAC CACAGGTGCC CTTTAAAACC
GTGTATGTCA CAGGGCTAAT TCGTGATGAA GCCGGCAACA AGATGTCAAA ATCTAAAGGC
AACGTGCTCG ATCCACTAGA TATGATTGAC GGCATCGAGC TTGAAACCTT AGTTGAAAAG
CGCACTGGCA ACATGATGCA GCCGCAGCTT GCCGCCAAAA TTGAAAAGAG CACTCGCAAA
GAATTTAGCG AAGGCATCGA AGCCCACGGC ACAGATGCAC TGCGATTTAC CTTAGCGGCC
ATGGCATCGA CGGGCCGCGA CATCAACTGG GACATGAAGC GTCTTGATGG TTACCGCAGT
TTCTGTAACA AGTTATGGAA TGCCTCACGC TATGTGTTAA TGAACACAGA GGTGCAAGCC
GATCCTGAAA GCAACGCCGC TGGTGAGCCG TTAGATTGTG GTCAACTCTT AGTTGATGGC
AAGCCTGGTG CCATGGAGCT GTCATTGGCG GATCGCTGGA TCATCGGCTT ATTTAACCAA
ACCGTGAAAA CCTTCGATGA CCATATGGCC GCCTACCGTT TTGACCTAGC CGCCAACACC
TTATACGAGT TCACTTGGAA CCAATTCTGT GACTGGTATT TGGAGCTAAC AAAGCCGGTA
ATGCAACACG GCAGCGAAGC GCAAATGCGC GGTACTCGCC ATACCTTAGT GACAGTGCTT
GAGAAGATGC AGCGTTTGAT GCACCCCATC ATGCCCTACA TCACTGAAAC CATTTGGCAG
CGGGTTAAGC CACTCGCTGG CGTGACTGGC GATACCTTGA TGCTTGCAAC CTTCCCAAGC
TATCAAGCTG AGCTTGTGGA CAATGATGCC ATGGCAGATC TTGAGTGGGT GAAACAAGTT
ATCGTCGCTG TGCGTAATAT TCGCGCCGAG CTTAACATAG CCCCTTCTAA GCCACTGAAT
GCCCTAGTGC GCGGCGTGAG CTACCAAGAC CGTATCCGTC TTGAAGCTAA CCAAGCCTTC
TTCACGAGTC TTGCGAAATT GGAAACCATC ACCATACTTG TTGAAGGTGA AACCGCCCCC
ATGTCCACCA CCCAATTTAT TGGCGACATG GAGCTACTCA TTCCAATGGC AGGCTTGATC
GATGTGGCCG CGGAAATGGC CCGTATCGAC AAGCAGTTAG AAAAGCTAGC CCAAGAAATT
GCCCGCATCG AAGGCAAATT ATCGAATCAA GGTTTTGTGG CCAAAGCCCC AGCCGCCGTT
ATCGATAAAG AACGCGCCAA GATGACCGAC TTAAGCCGTG ATATTGAAAA ATTGAACGAG
CAAAAAATCG AGCTCGCCAA GATTTAA
|
|---|
| Protein sequence | MEKTYNPKSI EQALYQNWEE QGYFKPHGDE SKGNYCIMIP PPNVTGSLHM GHAFQDTIMD
TLTRYQRMKG KNTLWQVGTD HAGIATQMLV ERKLEAEEGK TRHDLGRDAF IDKVWDWKAQ
SGGTITKQLR RMGASVDWDR ERFTMDEGLS KAVQEVFVRL YDDELIYRGK RLVNWDPKLH
TAISDLEVEN KEKQGHMWHF RYPLAEGALT ADGKDYLEVA TTRPETMLGD SAVAVHPDDE
RYQSLIGKFI LLPIVNRLIP IVADDYVDMA FGTGCVKITP AHDFNDYEVG KRHQLPMYNI
FTLDAAVRSF VEVINTDGTP NKDVELALPE RYVGLDRFKA RDAIVAEFET LGLLGKIDPH
GLKVPYGDRS GVVIEPLLTD QWYVAVQSMA KTAIEAVETG EIKFVPQQYE NMYFSWMRDI
NDWCISRQLW WGHRIPAWYD ENGKVYVGRN EAEVRAKHKL ADSAVLRQDD DVLDTWFSSA
LWTFSTLGWP DNLEDLKTFH PTDVLVTGFD IIFFWVARMI MMTMHFIKDE NGKPQVPFKT
VYVTGLIRDE AGNKMSKSKG NVLDPLDMID GIELETLVEK RTGNMMQPQL AAKIEKSTRK
EFSEGIEAHG TDALRFTLAA MASTGRDINW DMKRLDGYRS FCNKLWNASR YVLMNTEVQA
DPESNAAGEP LDCGQLLVDG KPGAMELSLA DRWIIGLFNQ TVKTFDDHMA AYRFDLAANT
LYEFTWNQFC DWYLELTKPV MQHGSEAQMR GTRHTLVTVL EKMQRLMHPI MPYITETIWQ
RVKPLAGVTG DTLMLATFPS YQAELVDNDA MADLEWVKQV IVAVRNIRAE LNIAPSKPLN
ALVRGVSYQD RIRLEANQAF FTSLAKLETI TILVEGETAP MSTTQFIGDM ELLIPMAGLI
DVAAEMARID KQLEKLAQEI ARIEGKLSNQ GFVAKAPAAV IDKERAKMTD LSRDIEKLNE
QKIELAKI
|
|---|
| |