| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2772 |
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| Symbol | algU |
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| ID | 4019291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3313787 |
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| End bp | 3314365 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637956818 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_563774 |
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| Protein GI | 91794123 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.133926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAACTA GTTGAGCGTG TACAGCAAGG TGATAAAAAT
GCCTTCAATC TGTTAGTGCA AAAGTACCAG AGTAAAGTGA TGAGTTTGAT TTCACGCTAT
GTGCGAAATC AAGCAGATGT GTCAGATGTT GCTCAAGAAG CCTTTATTAA AGCTTACCGT
GCTTTACCCA ATTTCAGAGG AGAAAGTGCG TTTTACACTT GGTTGTACCG AATAGCCGTC
AATTCTGCAA AGAACCATCT TGTTGCCCAA GGCCGTAAGT CTCCGGCCAA CAGCGTCGAT
ATTGATGATG CAGAGTATTA TGAAGGTAAT GATGCATTAA AAGAGTTTGC GACCCCGGAA
CGTCTGGTCT TGTCTGAAGA AATTAAGAAA GTGATTTTTG AGACATTAGA AGGCTTACCG
GAAGAACTTA GAATGGCCAT TTCTTTACGT GAACTCGATG GCATGAGTTA TGAAGAGATT
GCCAACGTGA TGGAGTGCCC CGTAGGCACA GTGCGTTCTA GGATCTTCAG GGCTCGTGAA
GCTATAGATA AAATGCTTCA ACCTTTGTTG GAAAATTAA
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| Protein sequence | MSGQISDQQL VERVQQGDKN AFNLLVQKYQ SKVMSLISRY VRNQADVSDV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NSAKNHLVAQ GRKSPANSVD IDDAEYYEGN DALKEFATPE
RLVLSEEIKK VIFETLEGLP EELRMAISLR ELDGMSYEEI ANVMECPVGT VRSRIFRARE
AIDKMLQPLL EN
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