| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2722 |
|---|
| Symbol | lspA |
|---|
| ID | 4019241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 3259202 |
|---|
| End bp | 3259750 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637956768 |
|---|
| Product | lipoprotein signal peptidase |
|---|
| Protein accession | YP_563724 |
|---|
| Protein GI | 91794073 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0597] Lipoprotein signal peptidase |
|---|
| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.214135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATTCGC CTAAGAAAGT AAGCCCAGTG AGCACGATAC CGGTAAGCTG GAAAGACAGT
GGTTTACGCT GGTATTGGGT AGCAGGGTTT GCCTTTGTGG CCGATCAACT GTCTAAACTA
TGGGTGTTAG CTAACTTTGA ATTGTCGGAA ACTGTACAGC TTCTGCCATT TTTCAACTTC
ACCTATGTGC GCAACTATGG TGCAGCATTT AGCTTTTTAA GCGATGCGGG TGGTTGGCAA
CGATGGTTTT TCACAGTTAT AGCCTTAGGT TTTAGTACCT TGCTAACCTT GTGGCTGCGT
AAGCAGTCAC ATACCTTGTG GCGTACTAAT TTAGCCTTTA CACTGGTTAT TGGTGGTGCA
TTGGGGAATT TAGTCGATAG GCTATATCAT GGCTATGTAG TGGATTTTCT CCATTTCTAT
TGGCAAAGCT ATCATTTCCC TGCCTTTAAC ATAGCGGATT CAGCCATCTT TATTGGCGCT
GTGCTTATTA TTTGGGACTC ATTTAAGCCC CAAAAGGCGT CAGTTGTGAG TCAAGATAGC
TTGAAGTAG
|
|---|
| Protein sequence | MNSPKKVSPV STIPVSWKDS GLRWYWVAGF AFVADQLSKL WVLANFELSE TVQLLPFFNF
TYVRNYGAAF SFLSDAGGWQ RWFFTVIALG FSTLLTLWLR KQSHTLWRTN LAFTLVIGGA
LGNLVDRLYH GYVVDFLHFY WQSYHFPAFN IADSAIFIGA VLIIWDSFKP QKASVVSQDS
LK
|
|---|
| |