| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2682 |
|---|
| Symbol | |
|---|
| ID | 4019199 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3213819 |
|---|
| End bp | 3214526 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637956726 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_563684 |
|---|
| Protein GI | 91794033 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00281403 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAA TAGCAGACAG ACTCAAGCTC GCCCAGTGCA GAATCGCTCA AGCTGAACAA
GAACATCACC GTCCAGCCCA AAGTGTCAAC CTCCTCGCCG TGAGTAAAAC CAAGCCCCTG
AGTGATATTA TCCAAGCCTA CCAAGCGGGA CAACGCCGTT TTGGGGAAAA TTATGTTCAA
GAAGGCCAGC AGAAAATCAT CGATTTGGCT CAAGATTATC CCGATATCGA GTGGCACTTT
ATTGGCCCGC TGCAATCAAA CAAGACCCGC ATCATTGCCG AACACTTCCA TTGGTTGCAC
ACCCTTGGCC GTGAAAAAAT AGCTCAACGT CTTCATCAGC AGCGCCCGCA AGATAAACCG
CCATTAAACG TATGCATACA AGTGAACATC AGTGGCGAAG ACAGTAAGGC AGGCGTCACC
CTTGCCGAAG TCCCAGCCCT TGCCAACATC ATCCATTCAC TGCCTAAGCT CAAGCTTAGA
GGGATAATGG CCATTCCCAG TCAACAGGCT AATTTTGACA ATGCCGGGCA AGCCCAAGCT
CAGCTTTCAA AGGAATTTAG CCAACTTAAG GCATGTTTTG ATACACTTAA GCAAACTTAC
CCTCAGCTAG ATACGCTTTC TATGGGCATG AGTGACGATC TTAGCCTTGC CATCGCCCAC
GGCTCAACCT TAGTGAGAAT AGGTAGCGCC ATTTTCGGAG CGCGCTAG
|
|---|
| Protein sequence | MTTIADRLKL AQCRIAQAEQ EHHRPAQSVN LLAVSKTKPL SDIIQAYQAG QRRFGENYVQ
EGQQKIIDLA QDYPDIEWHF IGPLQSNKTR IIAEHFHWLH TLGREKIAQR LHQQRPQDKP
PLNVCIQVNI SGEDSKAGVT LAEVPALANI IHSLPKLKLR GIMAIPSQQA NFDNAGQAQA
QLSKEFSQLK ACFDTLKQTY PQLDTLSMGM SDDLSLAIAH GSTLVRIGSA IFGAR
|
|---|
| |