Gene Sden_2660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2660 
Symbol 
ID4019177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp3191413 
End bp3191952 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content36% 
IMG OID637956704 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_563662 
Protein GI91794011 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTTA TTGATACAAA AATACCCGAT GTGAAAATCA TTGAACCACT AGTGTATGGC 
GATGAACGTG GTTTTTTTAT GGAAACATGG CGACAAAATG AATTTGAAGA AAAAGTCGCC 
AAAAAACCTT GCTCTTTTGT TCAAGATAAT CACACAAAAT CTAAGAAAGG TATTCTTCGA 
GGTTTGCATT ACCAAACTGA AAATGCTCAA GGTAAACTTG TACGCGTTGT TTCCGGTGAG 
GTGTTTGATG TGGCGGTTGA TATTAGAAAA GACTCATTAA CATATGGTCA ATGGGTTGGG 
GTGTATTTAT CTGCCGAAAA TAAGCGACAA TTATGGGTGC CAGAAGGGTT TGCCCATGGC 
TTTTATGTCA CCAGTGATGA GGCTGAGTTT GTCTATAAAT GTACTGAATA TTATAACCCT 
AGTTCGGAAG TGAGTATATT TTGGGATGAT AAAAGTTTAA ATATTCACTG GCCGTTAATT 
GATAGGCCTT TGTTATCGAG TAAAGATGAA AGCCTAGCAA TACATTTCAA TCAATTATAA
 
Protein sequence
MKVIDTKIPD VKIIEPLVYG DERGFFMETW RQNEFEEKVA KKPCSFVQDN HTKSKKGILR 
GLHYQTENAQ GKLVRVVSGE VFDVAVDIRK DSLTYGQWVG VYLSAENKRQ LWVPEGFAHG 
FYVTSDEAEF VYKCTEYYNP SSEVSIFWDD KSLNIHWPLI DRPLLSSKDE SLAIHFNQL