| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2607 |
|---|
| Symbol | |
|---|
| ID | 4019124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 3120885 |
|---|
| End bp | 3122216 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956651 |
|---|
| Product | Beta-glucosidase |
|---|
| Protein accession | YP_563609 |
|---|
| Protein GI | 91793958 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
|---|
| TIGRFAM ID | [TIGR03356] beta-galactosidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.776876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAT CCTTACCAGC CGATTCAAAC ATGCATTCAA CCTCGTTTAT TTATGGGGTG
GCGACGGCCT CATTCCAAAT CGAGGGTGGA GTCGACTCAC GCCTGCCCTG CATCTGGGAT
ACCTTTTGTG CCACAGAAGG TAACATTCGT GATGCATCCA ATGGTGAACA CGCCTGTGAG
CACTTAAAGT TATGGCGTGA AGATGTCGAC CTCATCGACT CATTAGGGGT CGATGCCTAT
CGATTATCCA TTTCTTGGCC ACGGGTGTTG CATAAAGACG GCAGCTTAAA CCCTCAGGGC
GTTAACTTTT ACATCGACCT GCTTGATGAG CTCAATCGCC GTGGCATTAA GGCCTTTGTG
ACCTTATATC ACTGGGATTT GCCCCAGCAT ATTGAAGATA ATGGCGGTTG GTTAAATCGT
GACACTGCGT ATTTATTTGC CGATTACGCC GACAAAATAA GCCAGGCATT TGGCGACCGA
GTTTATTCCT ATGCCACCTT TAATGAGCCC TTTTGCAGTT CATACTTAGG CTATGAAATT
GGTATTCATG CCCCTGGATT GGCTAAAAAA TCCTACGGCC GACAATCGGC CCACCATTTA
TTACTGGCTC ACGGCTTAGC CATGAAGGTG CTGCAAAAAA ACAGCCCCAA TAGCCAAAAT
GGTATCGTGC TCAATTTTAC TCCTTGTTAT AGCGCCACAG ATGCCGCCGC AGATATCCGC
GCCGCCAAGC AAGCCGATGA GTATTTCAAT CAATGGTACA TTAAGCCGTT GTTTGACCGT
TGTTACCCCG ATATTATCGA GGATTTGGCC AGTGAAGACT TGCCAAGCAT TGAAGAGGGA
GATTTTGATA TCATCGCCCA GCCGCTGGAT TTCTTAGGGA TTAACTTCTA TACCCGCGCA
GTCTATAAAG CCGATGAAAA AACAGGATTT AGCCAAGTCG ACATGCAAAA TGTGCCTAAA
ACCCAGATGG GCTGGGAGAT TTACCCCCAA GCCTTTACCG ATTTATTGAC TTCTCTCAAT
GCACTATATC CACTGCCTCC TGTCTACATC ACAGAGAATG GCGCGGCGAT GGACGATAAA
CTGCAAAACG GTAACGTGGA TGATCAAGAC AGACTGCAAT ACTATAATGC TCACTTGAAT
GCCGTGAATA ATGCCATCGA ACAAGGGGTG AATGTGATTG GCTACTTTGC CTGGAGTTTA
ATGGATAATT TTGAATGGGC TGAAGGCTAT TTAAAACGTT TCGGGATTGT CTATGTTGAT
TATCAAACCC AGCAGCGAAC CCTAAAAGCC AGTGCCCACG GCTACCGTGA CTTTATACAA
GCAAGAAAAT GA
|
|---|
| Protein sequence | MKISLPADSN MHSTSFIYGV ATASFQIEGG VDSRLPCIWD TFCATEGNIR DASNGEHACE
HLKLWREDVD LIDSLGVDAY RLSISWPRVL HKDGSLNPQG VNFYIDLLDE LNRRGIKAFV
TLYHWDLPQH IEDNGGWLNR DTAYLFADYA DKISQAFGDR VYSYATFNEP FCSSYLGYEI
GIHAPGLAKK SYGRQSAHHL LLAHGLAMKV LQKNSPNSQN GIVLNFTPCY SATDAAADIR
AAKQADEYFN QWYIKPLFDR CYPDIIEDLA SEDLPSIEEG DFDIIAQPLD FLGINFYTRA
VYKADEKTGF SQVDMQNVPK TQMGWEIYPQ AFTDLLTSLN ALYPLPPVYI TENGAAMDDK
LQNGNVDDQD RLQYYNAHLN AVNNAIEQGV NVIGYFAWSL MDNFEWAEGY LKRFGIVYVD
YQTQQRTLKA SAHGYRDFIQ ARK
|
|---|
| |